Information on SUBCLASS 4.9.5 |
Subclass Accession number: 5642
Subclass: 4.9.5 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation EC : 2.8 (>75 %) 2.8.4 (>75 %) 2.8.4.1 GO : GO:0016782 (>75 %) GO:0050497 (>75 %) GO:0050524 (>75 %) SCOP : 54861 (>75 %) 55088 (>75 %) 55089 (>75 %) |
Number of loops: 4 Average sequence ID (%) : 20.6 +/- 21.9 Average RMSD (Å) : 0.650 +/- 0.208 Consensus geometry
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Consensus Sequence: | XXhXGhXh |
(φψ)-conformation: | aabplpbb |
Pattern: | x | x | [STV] | x | [AFLT] | [AIY] | [AKL] | x | [ANR] | [FLY] | [PR] | [G] | [AFV] | [DKP] | [AIPT] | [GL] | [AT] |
Conservation: | -0.871 | -0.363 | 0.010 | -0.916 | -0.560 | -0.314 | -0.311 | -0.618 | -0.233 | 0.554 | 0.550 | 3.393 | -0.101 | 0.172 | -0.605 | -0.516 | 0.728 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e6y_C_3099 | 1e6y | C | 3101 | 3117 | FRSYFAAINFRGVDPGT | HHHHHHHHHSSS-EEEE | aaaaaaaaabxvbbxbb |
1h7w_A_771 | 1h7w | A | 776 | 792 | RAVTTIARALPGFPILA | HHHHHHHHHSTT--EEE | aaaaaaaaabpvxpbbx |
1hbn_C_98 | 1hbn | C | 100 | 116 | VRSRAYLCRYRGADAGT | HHHHHHHHH-SS-EEEE | aaaaaaaaabxvbbbbb |
1nm2_A_280 | 1nm2 | A | 280 | 296 | TLTGLAKRALPGVKTLA | HHHHHHHHHSTT-EEEE | aaaaaaaaabxvxxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e6y_C_3099 | 1e6y | C | GL3THIOGLYCIN | T - 3117 |
1h7w_A_771 | 1h7w | A | FMNFLAVIN MONONUCLEOTIDE | T - 793 |
1hbn_C_98 | 1hbn | C | GOLGLYCEROL | R - 108 |
1hbn_C_98 | 1hbn | C | GOLGLYCEROL | Y - 109 |
1hbn_C_98 | 1hbn | C | GOLGLYCEROL | R - 110 |
1hbn_C_98 | 1hbn | C | GOLGLYCEROL | G - 111 |
1hbn_C_98 | 1hbn | C | GL3THIOGLYCIN | T - 116 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h7w_A_771 | 1h7w | A | AC5FMN BINDING SITE FOR CHAIN A | T - 793 |
Clusters included in this Subclass |
CLUSTER: HE.4.253 |