ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.39.1

Subclass Accession number: 5818
Subclass: 5.39.1

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 26.5 +/- 36.2
Average RMSD (Å) : 1.000 +/- 0.294

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	XhhXXXhXh
(φψ)-conformation:	aalbabpbb

Pattern:	[aeg]	[lvy]	x	[ai]	[agi]	[el]	x	[hrt]	[ads]	[al]	x	[art]	[ak]	[fl]	[ag]	x	x	[aes]	[pv]	x	[ily]	x
Conservation:	-0.536	0.078	-0.168	0.490	-1.302	-0.592	-0.842	-0.076	-0.076	0.490	-1.149	-0.382	0.650	1.438	2.337	-0.536	-0.076	0.078	1.704	-1.915	0.384	-1.000

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f3v_A_94	1f3v	A	94	115	ALRAALQRSLAAALAQHSVPLQ	HHHHHHHHHHHHHTT-S---EE	aaaaaaaaaaaaaalbabbwbb
1ptm_A_178	1ptm	A	183	204	EVIAILHHDLRTKFGIAEPRIL	HHHHHHHHHHHHTT--SS--EE	aaaaaaaaaaaaaavxabxbbb
1q74_A_64	1q74	A	66	86	GYRIGELTAALRALGVSAPIY.	HHHHHHHHHHHHHTT----EE.	aaaaaaaaaaaaaavbabxbb.
1r8k_A_178	1r8k	A	183	204	EVIAILHHDLRTKFGIAEPRIL	HHHHHHHHHHHHTS--SS--EE	aaaaaaaaaaaaaavbabpbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	L - 181
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	I - 185
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	A - 186
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	L - 188
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	H - 189
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	D - 191
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	L - 192
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	T - 194
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	K - 195
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	F - 196
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	E - 200
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	P - 201
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	I - 203
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	V - 205
1ptm_A_178	1ptm	A	MSESELENOMETHIONINE	C - 206
1q74_A_64	1q74	A	PE42-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL	G - 66
1q74_A_64	1q74	A	PE42-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL	Y - 67
1q74_A_64	1q74	A	PE42-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL	R - 68
1q74_A_64	1q74	A	PE42-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL	I - 69
1q74_A_64	1q74	A	PE42-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL	G - 70
1q74_A_64	1q74	A	PE42-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL	E - 71
1q74_A_64	1q74	A	PE42-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL	T - 73
1q74_A_64	1q74	A	PE42-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL	A - 74
1q74_A_64	1q74	A	PE42-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL	R - 77

Clusters included in this Subclass

CLUSTER: HE.7.107

CLUSTER: HE.8.98