ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.52.1

Subclass Accession number: 5831
Subclass: 5.52.1

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
GO : GO:0004333 (>50 %) GO:0016829 (>75 %) GO:0016835 (>50 %) GO:0016836 (>50 %)
SCOP : 48556 (>75 %) 48556 (>75 %) 48557 (>75 %) 48557 (>75 %) 48558 (>75 %) 48558 (>75 %)

Number of loops: 3

Average sequence ID (%) : 33.3 +/- 17.5
Average RMSD (Å) : 0.233 +/- 0.058

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 45-90

rho (°): 45-90

Consensus Sequence:	XphhXGIph
(φψ)-conformation:	aaIaaapbb

Pattern:	[EKR]	[P]	[MV]	[LMV]	[AFI]	[FHY]	[NS]	[FLT]	[IL]	[EQ]	[S]	[IV]	[NRS]	[IL]	[LM]	[AT]	[DN]	[AGV]	[FMV]	[AEK]	[S]	[F]	[DNT]	[AEK]	[HN]	[CL]	[AL]	x	[G]	[I]	[EK]	[AP]
Conservation:	-0.406	2.660	-0.133	-0.406	-1.355	0.178	0.310	-1.282	0.063	0.434	0.689	0.387	-0.844	0.063	0.164	-0.462	0.438	-1.355	-0.844	-1.063	0.689	2.003	-0.698	-1.063	0.924	0.501	-0.876	-1.355	2.003	0.689	0.094	-0.147

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fuq_A_362	1fuq	A	362	393	RPMVIHNFLQSVRLLADGMESFNKHCAVGIEP	HHHHHHHHHHHHHHHHHHHHHHHHHTGGG-EE	aaaaaaaaaaaaaaaaaaaaaaaaaIaaaxbx
1j3u_A_362	1j3u	A	362	393	EPVLFFNLIQSISIMTNVFKSFTENCLKGIKA	HHHHHHHHHHHHHHHHHHHHHHHHTTGGG-EE	aaaaaaaaaaaaaaaaaaaaaaaaaIaaaxbb
1vdk_A_362	1vdk	A	362	393	KPVMAYSTLESINLLADAVASFDAHLAQGIEP	HHHHHHHHHHHHHHHHHHHHHHHHHTGGG-EE	aaaaaaaaaaaaaaaaaaaaaaaaaIaaaxbx

Clusters included in this Subclass