ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.67.1

Subclass Accession number: 5846
Subclass: 5.67.1

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
GO : GO:0003779 (>50 %) GO:0005515 (>50 %) GO:0008092 (>50 %)
SCOP : 55752 (>50 %) 55753 (>50 %) 55762 (>50 %)

Number of loops: 3

Average sequence ID (%) : 22.7 +/- 21.8
Average RMSD (Å) : 1.033 +/- 0.404

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	pXLXchpXX
(φψ)-conformation:	aappgpabb

Pattern:	x	[KL]	[AM]	[MTV]	[LY]	[AT]	[NS]	[ST]	[KS]	[AD]	x	[IL]	[KRY]	[EKR]	[AKR]	[L]	[NTV]	[DG]	[IV]	[NQS]	[TVW]	[ADE]	[GV]	[FQ]	[AGY]
Conservation:	-0.625	-0.539	0.001	-0.508	0.855	0.358	0.994	1.229	0.541	-0.112	-1.266	1.248	-0.634	0.377	-0.508	2.272	-1.140	0.769	1.760	-0.129	-1.013	-0.634	-1.165	-0.737	-1.393

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cfy_A_95	1cfy	A	97	121	SKMVYASSKDALRRALNGVSTDVQG	HHHHHHHHHHHHHHH-TT--EEEEE	aaaaaaaaaaaaaaabxgxabbbxb
1cnu_A_91	1cnu	A	93	117	SKMMYTSTKDSIKKKLVGIQVEVQA	HHHHHHHHHHHHHHHSTT--EEEEE	aaaaaaaaaaaaaaaxpgxabbbbb
1vhm_A_42	1vhm	A	42	66	FLATLANTSALLYERLTDINWAGFY	HHHHHHHHHHHHHHHSSS-SEEEEE	aaaaaaaaaaaaaaaxxlbabbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1vhm_A_42	1vhm	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	W - 62
1vhm_A_42	1vhm	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	Y - 66

Clusters included in this Subclass