Information on SUBCLASS 7.12.1 |
Subclass Accession number: 8698
Subclass: 7.12.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 47.4 +/- 25.4 Average RMSD (Å) : 0.240 +/- 0.055 Consensus geometry
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Consensus Sequence: | ATNpGchpXXI |
(φψ)-conformation: | aallgppbpbb |
Pattern: | [AEK] | [aeq] | [DEGS] | [FMV] | [fr] | [DNQST] | [hsy] | [IL] | [CFT] | [HNRY] | [H] | [IV] | [ekl] | [QTY] | [A] | [T] | [N] | [EKNR] | [G] | [KN] | [IL] | [KR] | [PS] | [as] | [I] | [T] | [IV] |
Conservation: | -0.811 | -0.838 | -0.822 | -0.514 | -1.055 | -0.866 | -0.935 | 0.169 | -0.692 | -0.676 | 2.685 | 0.407 | -1.253 | -0.833 | 0.620 | 1.137 | 1.653 | -0.556 | 1.653 | -0.034 | 0.107 | 0.455 | -0.239 | -0.901 | 0.620 | 1.137 | 0.385 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1d0c_A_206 | 1d0c | A | 206 | 232 | AQEMFTYICNHIKYATNRGNLRSAITV | HHHHHHHHHHHHHHHHGGGS---EEEE | aaaaaaaaaaaaaaaallgxxbxbbbb |
1m7v_A_82 | 1m7v | A | 82 | 108 | KEDVRDALFHHIETATNNGKIRPSITI | HHHHHHHHHHHHHHHHGGGS---EEEE | aaaaaaaaaaaaaaaallgxpbwbbbx |
1mjt_A_82 | 1mjt | A | 82 | 108 | EASFLSSITYHITQATNEGKLKPYITI | HHHHHHHHHHHHHHHHGGGS---EEEE | aaaaaaaaaaaaaaaallgxpbwbbbx |
1nos_*_214 | 1nos | - | 214 | 240 | AQEMFQHICRHILYATNNGNIRSAITV | HHHHHHHHHHHHHHHHGGGS---EEEE | aaaaaaaaaaaaaaaallgxpbxbbbb |
1om4_A_435 | 1om4 | A | 435 | 461 | AHGMFNYICNHVKYATNKGNLRSAITI | HHHHHHHHHHHHHHHHGGGS---EEEE | aaaaaaaaaaaaaaaallgxpbxbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1d0c_A_206 | 1d0c | A | HEMPROTOPORPHYRIN IX CONTAINING FE | S - 228 |
1d0c_A_206 | 1d0c | A | HEMPROTOPORPHYRIN IX CONTAINING FE | A - 229 |
1d0c_A_206 | 1d0c | A | HEMPROTOPORPHYRIN IX CONTAINING FE | I - 230 |
1m7v_A_82 | 1m7v | A | HEMPROTOPORPHYRIN IX CONTAINING FE | P - 104 |
1m7v_A_82 | 1m7v | A | HEMPROTOPORPHYRIN IX CONTAINING FE | S - 105 |
1m7v_A_82 | 1m7v | A | HEMPROTOPORPHYRIN IX CONTAINING FE | I - 106 |
1mjt_A_82 | 1mjt | A | HEMPROTOPORPHYRIN IX CONTAINING FE | Y - 105 |
1nos_*_214 | 1nos | * | HEMPROTOPORPHYRIN IX CONTAINING FE | S - 236 |
1nos_*_214 | 1nos | * | HEMPROTOPORPHYRIN IX CONTAINING FE | A - 237 |
1nos_*_214 | 1nos | * | HEMPROTOPORPHYRIN IX CONTAINING FE | I - 238 |
1om4_A_435 | 1om4 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | S - 457 |
1om4_A_435 | 1om4 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | A - 458 |
1om4_A_435 | 1om4 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | I - 459 |
Clusters included in this Subclass |
CLUSTER: HE.6.84 |