Information on SUBCLASS 23.1.1 |
Subclass Accession number: 5178
Subclass: 23.1.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0003700 (>75 %) GO:0003707 (>75 %) GO:0004872 (>75 %) GO:0004879 (>75 %) GO:0005496 (>75 %) SCOP : 57715 (>75 %) 57716 (>75 %) 57721 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 49.6 +/- 5.5 Average RMSD (Å) : 0.733 +/- 0.115 Consensus geometry
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Consensus Sequence: | hpcpXpYXCXXpcpCXIDKXpRcpCXh |
(φψ)-conformation: | aappbbpbpaFalapppbaaaaaabaa |
Pattern: | [EG] | [GS] | [C] | [K] | [AGV] | [F] | [F] | [K] | [R] | [AST] | [IV] | [EQR] | [GK] | [DHQ] | x | [DNT] | [Y] | [LMT] | [C] | x | [ADG] | [NRT] | [KN] | [DQ] | [C] | [ILT] | [I] | [D] | [K] | x | [QR] | [R] | [KN] | [NRS] | [C] | [PQ] | [AY] | [C] | [R] | [LY] | [QR] | [K] | [C] | [LY] | [AEQ] |
Conservation: | -0.762 | -0.374 | 1.976 | 0.451 | -1.116 | 0.833 | 0.833 | 0.451 | 0.451 | -0.735 | -0.112 | -0.565 | -0.696 | -0.735 | -1.116 | -0.735 | 1.214 | -0.862 | 1.976 | -1.116 | -1.031 | -0.862 | -0.329 | -0.320 | 1.976 | -0.904 | 0.070 | 0.833 | 0.451 | -1.328 | -0.282 | 0.451 | -0.404 | -0.820 | 1.976 | -0.522 | -0.845 | 1.976 | 0.451 | -0.422 | -0.282 | 0.451 | 1.976 | -0.663 | -0.862 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1hcq_A_25 | 1hcq | A | 25 | 69 | EGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYE | HHHHHHHHHHHSS------SSSS----STTTTTT-HHHHHHHHHH | aaaaaaaaaaaaepbbxbbaFavaxxbbaaaaaabaaaaaaaaaa |
1r4o_A_458 | 1r4o | A | 458 | 502 | GSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQ | HHHHHHHHHHHHS------SSSS-----TTGGGT-HHHHHHHHHH | aaaaaaaaaaaaxxbbbbpaFavaxxxbaaaaaabaaaaaaaaaa |
2nll_A_153 | 2nll | A | 153 | 197 | EGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLA | HHHHHHHHHHHHT------SSSS-----TTTTTS-HHHHHHHHHH | aaaaaaaaaaaaxxbbxbxaFalapxxbaaaaaabaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Clusters included in this Subclass |
CLUSTER: HH.23.1 |