Information on SUBCLASS 3.5.5 |
Subclass Accession number: 4708
Subclass: 3.5.5 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 17.1 +/- 16.8 Average RMSD (Å) : 0.883 +/- 0.172 Consensus geometry
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Consensus Sequence: | XchpDXX |
(φψ)-conformation: | aapabaa |
Pattern: | [ADEKNQ] | [AEKR] | [dewy] | [ALV] | [degs] | [DGKNR] | [ACILT] | [dhkt] | [DT] | x | [dgsv] | [ADEK] | [eksy] | [KLV] | [DN] | [knry] |
Conservation: | -0.217 | 0.340 | -0.679 | 0.660 | -0.615 | -0.185 | -0.304 | -0.696 | 2.231 | -1.238 | -0.868 | 0.278 | -0.588 | 0.342 | 2.177 | -0.638 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ddz_A_238 | 1ddz | A | 238 | 253 | AKYLDKCKDGDEELNR | HHHHTT-SSHHHHHHH | aaaaaapabaaaaaaa |
1ddz_A_492 | 1ddz | A | 492 | 507 | QAELSRITDPKDSLNR | HHHHTT--SHHHHHHH | aaaaaabaxaaaaaaa |
1f80_D_56 | 1f80 | D | 56 | 71 | DEDAEKIATVGDAVNY | HHHHHH--BHHHHHHH | aaaaaaxabaaaaaaa |
1iu4_A_119 | 1iu4 | A | 134 | 149 | NRALENAHDESAYLDN | HHTTTT-SSHHHHHHH | aaaaaababaaaaaaa |
1mx1_A_1396 | 1mx1 | A | 1401 | 1416 | EKYLGGTDDTVKKKDL | HHHHTT---HHHHHHH | aaaaaabaxaaaaaaa |
1poi_A_272 | 1poi | A | 280 | 295 | KEWVFDLKDHDEYLNK | HHHTTT-SSHHHHHHH | aaaaaaxabaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1f80_D_56 | 1f80 | D | PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE | D - 56 |
1f80_D_56 | 1f80 | D | PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE | E - 57 |
1f80_D_56 | 1f80 | D | PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE | D - 58 |
1f80_D_56 | 1f80 | D | PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE | A - 59 |
1f80_D_56 | 1f80 | D | PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE | E - 60 |
1f80_D_56 | 1f80 | D | PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE | K - 61 |
1f80_D_56 | 1f80 | D | PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE | I - 62 |
1f80_D_56 | 1f80 | D | PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE | A - 63 |
1f80_D_56 | 1f80 | D | PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE | T - 64 |
1f80_D_56 | 1f80 | D | PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE | A - 68 |
1mx1_A_1396 | 1mx1 | A | THATACRINE | M - 1425 |
Clusters included in this Subclass |
CLUSTER: HH.4.203 |
CLUSTER: HH.5.310 |
CLUSTER: HH.6.266 |