Information on SUBCLASS 5.3.5 |
Subclass Accession number: 2444
Subclass: 5.3.5 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 10.7 +/- 11.9 Average RMSD (Å) : 1.033 +/- 0.289 Consensus geometry
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Consensus Sequence: | XXGXphpXp |
(φψ)-conformation: | aalppppaa |
Pattern: | x | [HNY] | x | [AFM] | x | [KTW] | [IY] | [HL] | x | [G] | x | [EHT] | [LP] | [DST] | x | [DET] | [EK] | x | [ALV] | [AKN] | [AIL] | [AI] | [EKR] | [AIK] | x |
Conservation: | -0.443 | 0.790 | -0.883 | -0.443 | -0.883 | -0.443 | 1.152 | 0.810 | -0.971 | 3.518 | -0.707 | -0.179 | 0.434 | 0.085 | -0.531 | 0.173 | 1.290 | -0.707 | -0.179 | -0.443 | -0.179 | 0.151 | 0.614 | -0.971 | -1.059 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dar_*_225 | 1dar | - | 225 | 249 | ENIMLKYLEGEEPTEEELVAAIRKG | HHHHHHHHHT----HHHHHHHHHHH | aaaaaaaaavxxwxaaaaaaaaaaa |
1n1b_A_412 | 1n1b | A | 427 | 451 | FHEAKWYHSGYTPSLDEYLNIAKIS | HHHHHHHHHT----HHHHHHHHHHH | aaaaaaaaavxbxxaaaaaaaaaaa |
1r5a_A_106 | 1r5a | A | 112 | 136 | DYYFPTIHLGAHLDQTKKAKLAEAL | HHHHHHHHH-----HHHHHHHHHHH | aaaaaaaaalxxxbaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1n1b_A_412 | 1n1b | A | MGMAGNESIUM ION | Y - 426 |
1n1b_A_412 | 1n1b | A | MGMAGNESIUM ION | E - 429 |
1n1b_A_412 | 1n1b | A | HGMERCURY (II) ION | K - 449 |
1n1b_A_412 | 1n1b | A | MGMAGNESIUM ION | S - 451 |
1r5a_A_106 | 1r5a | A | GTSGLUTATHIONE SULFONIC ACID | Y - 107 |
1r5a_A_106 | 1r5a | A | GTSGLUTATHIONE SULFONIC ACID | F - 115 |
1r5a_A_106 | 1r5a | A | GTSGLUTATHIONE SULFONIC ACID | H - 119 |
Clusters included in this Subclass |
CLUSTER: HH.5.246 |