Logo
Information on SUBCLASS 5.5.1
Subclass Accession number: 4888
Subclass: 5.5.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 26

Average sequence ID (%) : 22.8 +/- 23.5
Average RMSD (Å) : 0.812 +/- 0.417

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XhGpphpXX
(φψ)-conformation: aaeaappaa
Pattern: x[amptv][ILMVY][aegk]x[dehkrs][fhilmvy][AGKS][adgknqr][adeknst][AFILMVWY][DKNRST][adep][adepqt]xx[adgkqrs][agqst][AFILMWY][adeqst][adgkqst][afkltv][filtvy][adegkrs][agilvy]x
Conservation:-1.385-0.3362.2830.274-0.523-0.7010.0122.371-0.188-0.4310.6131.2450.1950.238-0.816-0.833-0.8250.4861.675-0.505-0.658-0.8200.839-0.751-1.105-0.353
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a4f_B_1011a4f   B112137IVLAAHFAKEFTPDCQAAWQKLVRVVHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1aui_B_1081aui   B113138QVLKMMVGNNLKDTQLQQIVDKTIINHHHHHHHTTSS-HHHHHHHHHHHHHHaaaaaaaeaabxaaaaaaaaaaaaaa
1cg5_B_961cg5   B107132VELALHYKKTFRPKEHAAAYKFFRLVHHHHHHHGGG--HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1cqx_A_951cqx   A104129AAIKEVLGNAATDDIISAWAQAYGNLHHHHHHHGGG--HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1fsl_A_991fsl   A111136KTIKAAVGDKWSDELSRAWEVAYDELHHHHHHHGGG--HHHHHHHHHHHHHHaaaaaaaeaaxbaaaaaaaaaaaaaa
1gcv_B_931gcv   B102127VELAYLRKDCFTPHIQGIWDKFFEVVHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1hbr_A_961hbr   A107132VVLAVHMGKDYTPEVHAAFDKFLSAVHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1hbr_B_1001hbr   B112137IVLAAHFSKDFTPECQAAWQKLVRVVHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1ird_B_3011ird   B312337CVLAHHFGKEFTPPVQAAYQKVVAGVHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1itk_A_1371itk   A137162LPIKQKYGQKISWADLMILAGNVAIEHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaabxaaaaaaaaaaaaaa
1iwh_B_3011iwh   B312337VVLARHFGKDFTPELQASYQKVVAGVHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1jeb_B_1011jeb   B112137IVLGHHLGKDFTPAAQAAFQKVVAGVHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1jl6_A_1031jl6   A112137SAMEHRIGGKMNAAAKDAWAAAYADIHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1la6_B_1011la6   B112137IVLAAKMGHAFTAETQGAFQKFLAAVHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1lfk_A_2091lfk   A211236GAVVAEYGDDATDEELRGFCVQVMLAHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1mwv_A_1531mwv   A153178WPIKQKYGRAISWADLLILTGNVALEHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaabxaaaaaaaaaaaaaa
1oj6_A_1051oj6   A115140YMLEKSLGPAFTPATRAAWSQLYGAVHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1out_B_1011out   B112137IVIAAKFGASFTPEIQATWQKFMKVVHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1qpw_B_1011qpw   B112137VVLARRLGHDFNPDVQAAFQKVVAGVHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
1sct_A_1151sct   A120145ETLKARMGNYYSDDVAGAWAALVGVVHHHHHHHGGG--HHHHHHHHHHHHHHaaaaaaaeaaxbaaaaaaaaaaaaaa
1sct_B_1171sct   B122147QTLKARMGNYFDEDTVAAWASLVAVVHHHHHHHGGG--HHHHHHHHHHHHHHaaaaaaaeaaxbaaaaaaaaaaaaaa
1ub2_A_1351ub2   A135160WPIKQKYGNKLSWADLIAYAGTIAYEHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaabxaaaaaaaaaaaaaa
1ued_A_2181ued   A220245GMIVRDHGDNVTDEELKGLCTALILGHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaabxaaaaaaaaaaaaaa
1v75_A_951v75   A107132VVLGAHLGREYTPQVQVAYDKFLAAVHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaaxxaaaaaaaaaaaaaa
2gdm_*_1072gdm   -116141KTIKEVVGAKWSEELNSAWTIAYDELHHHHHHHGGG--HHHHHHHHHHHHHHaaaaaaaeaapbaaaaaaaaaaaaaa
2sas_*_282sas   -3661TRYKEVNKGSLSDADYKSMQASLEDEHHHHHHHGGGS-HHHHHHHHHHHHHHaaaaaaaeaabxaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a4f_B_1011a4f   B     HEMPROTOPORPHYRIN IX CONTAINING FE N - 102
1a4f_B_1011a4f   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 103
1a4f_B_1011a4f   B     HEMPROTOPORPHYRIN IX CONTAINING FE R - 104
1a4f_B_1011a4f   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 106
1a4f_B_1011a4f   B     OXYOXYGEN MOLECULE L - 106
1a4f_B_1011a4f   B     HEMPROTOPORPHYRIN IX CONTAINING FE G - 107
1a4f_B_1011a4f   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 134
1a4f_B_1011a4f   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 137
1a4f_B_1011a4f   B     HEMPROTOPORPHYRIN IX CONTAINING FE A - 138
1a4f_B_1011a4f   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 141
1aui_B_1081aui   B     CACALCIUM ION E - 110
1aui_B_1081aui   B     CACALCIUM ION A - 139
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE N - 97
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 98
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 101
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 129
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 132
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE A - 133
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 136
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 95
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 96
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 98
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL V - 98
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL L - 102
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL I - 106
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL W - 122
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 125
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL A - 125
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 126
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL Y - 126
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 127
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 129
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL L - 129
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 130
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 133
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 99
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 100
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 101
1fsl_A_991fsl   A     NIONICOTINIC ACID Q - 101
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 102
1fsl_A_991fsl   A     NIONICOTINIC ACID F - 102
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 103
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 104
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 105
1fsl_A_991fsl   A     NIONICOTINIC ACID V - 105
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 106
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 109
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 133
1fsl_A_991fsl   A     NIONICOTINIC ACID Y - 133
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 134
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 137
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 140
1fsl_A_991fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 141
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 93
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE H - 94
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 95
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 96
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE T - 97
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 127
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE I - 128
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE I - 131
1hbr_A_961hbr   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 102
1hbr_A_961hbr   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 105
1hbr_A_961hbr   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 133
1ird_B_3011ird   B     HEMPROTOPORPHYRIN IX CONTAINING FE N - 302
1ird_B_3011ird   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 303
1ird_B_3011ird   B     HEMPROTOPORPHYRIN IX CONTAINING FE R - 304
1ird_B_3011ird   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 306
1ird_B_3011ird   B     CMOCARBON MONOXIDE L - 306
1ird_B_3011ird   B     HEMPROTOPORPHYRIN IX CONTAINING FE G - 307
1ird_B_3011ird   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 337
1ird_B_3011ird   B     HEMPROTOPORPHYRIN IX CONTAINING FE A - 338
1ird_B_3011ird   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 341
1jeb_B_1011jeb   B     CMOCARBON MONOXIDE L - 106
1jeb_B_1011jeb   B     HEMPROTOPORPHYRIN IX CONTAINING FE I - 110
1jl6_A_1031jl6   A     CNCYANIDE GROUP L - 106
1jl6_A_1031jl6   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 134
1jl6_A_1031jl6   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 137
1jl6_A_1031jl6   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 138
1la6_B_1011la6   B     HEMPROTOPORPHYRIN IX CONTAINING FE S - 107
1la6_B_1011la6   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 138
1lfk_A_2091lfk   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 232
1lfk_A_2091lfk   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 233
1lfk_A_2091lfk   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 236
1oj6_A_1051oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 105
1oj6_A_1051oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 106
1oj6_A_1051oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 109
1oj6_A_1051oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 137
1oj6_A_1051oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 140
1oj6_A_1051oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 144
1out_B_1011out   B     HEMPROTOPORPHYRIN IX CONTAINING FE A - 107
1out_B_1011out   B     HEMPROTOPORPHYRIN IX CONTAINING FE M - 134
1out_B_1011out   B     HEMPROTOPORPHYRIN IX CONTAINING FE M - 141
1qpw_B_1011qpw   B     O2OXYGEN MOLECULE L - 106
1sct_A_1151sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 118
1sct_B_1171sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 120
1sct_A_1151sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 142
1sct_B_1171sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 144
1ub2_A_1351ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 159
1ued_A_2181ued   A     PG4TETRAETHYLENE GLYCOL T - 240
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 241
1ued_A_2181ued   A     PG4TETRAETHYLENE GLYCOL A - 241
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 242
1ued_A_2181ued   A     PG4TETRAETHYLENE GLYCOL L - 242
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 243
1ued_A_2181ued   A     PG4TETRAETHYLENE GLYCOL L - 244
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 245
1ued_A_2181ued   A     PG4TETRAETHYLENE GLYCOL G - 245
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 246
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 247
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 249
1ued_A_2181ued   A     PG4TETRAETHYLENE GLYCOL T - 249
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 250
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 253
1v75_A_951v75   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 99
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 107
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE P - 108
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 110
2gdm_*_1072gdm   *     OXYOXYGEN MOLECULE V - 110
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 114
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 138
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 142
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 145
2sas_*_282sas   *     CACALCIUM ION N - 29
2sas_*_282sas   *     CACALCIUM ION D - 30
2sas_*_282sas   *     CACALCIUM ION A - 69
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1aui_B_1081aui   B CA3CALCIUM BINDING SITE.E - 110
1oj6_A_1051oj6   A AC1HEM BINDING SITE FOR CHAIN AF - 106

Clusters included in this Subclass
CLUSTER: HH.4.22
CLUSTER: HH.5.52