Information on SUBCLASS 5.6.1 |
Subclass Accession number: 9108
Subclass: 5.6.1 Type: HH alpha-alpha DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 18.2 +/- 21.3 Average RMSD (Å) : 0.675 +/- 0.167 Consensus geometry
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Consensus Sequence: | XpcXhXpXp |
(φψ)-conformation: | aalababaa |
Pattern: | [ader] | x | x | x | [ADEKRS] | [dehkns] | [GNR] | x | [FIY] | [aknqr] | [KST] | [dkpr] | [AEK] | [adv] | [AEFK] | [aeqr] | x | x | x |
Conservation: | 0.202 | -0.803 | -1.162 | -0.695 | -0.091 | -0.555 | 2.203 | -0.141 | 1.657 | -0.242 | 1.611 | -0.435 | 1.565 | -0.224 | -0.479 | -0.329 | -0.578 | -0.306 | -1.198 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e6i_A_374 | 1e6i | A | 378 | 396 | EIKLESNKYQKMEDFIYDA | HHHHHTT--SSHHHHHHHH | aaaaaavababaaaaaaaa |
1eqf_A_1427 | 1eqf | A | 1431 | 1449 | RENVRKRLYPSREEFREHL | HHHHHTT--SSHHHHHHHH | aaaaaalababaaaaaaaa |
1i1n_A_9 | 1i1n | A | 14 | 32 | HNLRKNGIIKTDKVFEVML | HHHHHTTS--SHHHHHHHH | aaaaaavaxabaaaaaaaa |
1icr_A_92 | 1icr | A | 100 | 118 | DQEDADGRFATPEAKAAND | HHHHHTT--SSHHHHHHHH | aaaaaavababaaaaaaaa |
1jg1_A_15 | 1jg1 | A | 26 | 44 | EMLKAEGIIRSKEVERAFL | HHHHHTTS--SHHHHHHHH | aaaaaavaxabaaaaaaaa |
1kqb_A_92 | 1kqb | A | 100 | 118 | DQEEADGRFNTPEAKAANH | HHHHHTT--SSHHHHHHHH | aaaaaavababaaaaaaaa |
1ps1_A_28 | 1ps1 | A | 28 | 46 | AWPRSLGLIRSDAAAERHL | HHHHHTTS--SHHHHHHHH | aaaaaavabaxaaaaaaaa |
1r18_A_10 | 1r18 | A | 15 | 33 | RQLKDHGVIASDAVAQAMK | HHHHHTTS---HHHHHHHH | aaaaaavabaxaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e6i_A_374 | 1e6i | A | ALYN(6)-ACETYLLYSINE | N - 402 |
1e6i_A_374 | 1e6i | A | ALYN(6)-ACETYLLYSINE | C - 403 |
1e6i_A_374 | 1e6i | A | ALYN(6)-ACETYLLYSINE | Y - 406 |
1icr_A_92 | 1icr | A | FMNFLAVIN MONONUCLEOTIDE | E - 102 |
1icr_A_92 | 1icr | A | FMNFLAVIN MONONUCLEOTIDE | R - 107 |
1icr_A_92 | 1icr | A | FMNFLAVIN MONONUCLEOTIDE | R - 121 |
1icr_A_92 | 1icr | A | NIONICOTINIC ACID | F - 124 |
1kqb_A_92 | 1kqb | A | BEZBENZOIC ACID | F - 124 |
Clusters included in this Subclass |
CLUSTER: HH.5.26 |