Information on SUBCLASS 6.23.1 |
Subclass Accession number: 4966
Subclass: 6.23.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 56.8 +/- 21.6 Average RMSD (Å) : 0.340 +/- 0.152 Consensus geometry
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Consensus Sequence: | XXGLpXXSAp |
(φψ)-conformation: | aagaaappaa |
Pattern: | [hp] | [KQ] | [AK] | [F] | [F] | [AQ] | [KLMT] | [SV] | [G] | [L] | [KST] | [AKS] | [KM] | [S] | [A] | [DNS] | [DQ] | [IV] | [K] | [DK] | [AIV] | [F] | [fhkr] | [AFIV] | [IL] |
Conservation: | -0.448 | 0.098 | -0.579 | 1.711 | 1.711 | -0.694 | -1.313 | -0.992 | 1.711 | 0.579 | -0.810 | -0.876 | -0.553 | 0.579 | 0.579 | -0.361 | 0.066 | 0.330 | 1.145 | -0.351 | -0.668 | 1.711 | -1.594 | -1.069 | 0.084 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bu3_*_26 | 1bu3 | - | 26 | 50 | YKAFFAKVGLTAKSADDIKKAFFVI | HHHHHHHHTGGGS-HHHHHHHHHHH | aaaaaaaavaaaxxaaaaaaaaaaa |
1cdp_*_26 | 1cdp | - | 26 | 50 | HKAFFAKVGLTSKSADDVKKAFAII | HHHHHHHHTGGGS-HHHHHHHHHHH | aaaaaaaavaaaxxaaaaaaaaaaa |
1pva_A_26 | 1pva | A | 26 | 50 | HKKFFALVGLKAMSANDVKKVFKAI | HHHHHHHHT-TTS-HHHHHHHHHHH | aaaaaaaagaaaxxaaaaaaaaaaa |
1rro_*_26 | 1rro | - | 26 | 50 | PQKFFQTSGLSKMSASQVKDIFRFI | HHHHHHHHSGGGS-HHHHHHHHHHH | aaaaaaaavaaaxxaaaaaaaaaaa |
1rwy_A_26 | 1rwy | A | 26 | 50 | HKKFFQMVGLKKKSADDVKKVFHIL | HHHHHHHHTGGGS-HHHHHHHHHHH | aaaaaaaagaaabxaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bu3_*_26 | 1bu3 | * | CACALCIUM ION | I - 50 |
1cdp_*_26 | 1cdp | * | CDCADMIUM ION | I - 50 |
1rro_*_26 | 1rro | * | CACALCIUM ION | S - 36 |
1rro_*_26 | 1rro | * | CACALCIUM ION | K - 37 |
1rro_*_26 | 1rro | * | CACALCIUM ION | M - 38 |
1rro_*_26 | 1rro | * | CACALCIUM ION | S - 39 |
1rwy_A_26 | 1rwy | A | CACALCIUM ION | L - 50 |
Clusters included in this Subclass |
CLUSTER: HH.5.121 |