Information on SUBCLASS 3.8.3 |
Subclass Accession number: 1188
Subclass: 3.8.3 Type: EH beta-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 18.1 +/- 17.3 Average RMSD (Å) : 0.780 +/- 0.192 Consensus geometry
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Consensus Sequence: | XhXccXX |
(φψ)-conformation: | bbppbaa |
Pattern: | [AGV] | [GIY] | [ft] | x | [gy] | x | [AILV] | [prs] | [DEN] | [DNS] | [EKP] | [ekl] | [AEGS] | [ail] | [akm] | [AV] | [AEL] | [fgi] | [ehry] | [EKL] | [ANR] |
Conservation: | -0.235 | -0.459 | 0.233 | 0.027 | 0.022 | -1.077 | 0.768 | -0.676 | 2.272 | 1.818 | 0.835 | -0.970 | 0.080 | -0.930 | -0.166 | 1.688 | -0.430 | -1.601 | -0.863 | -0.355 | 0.020 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1g8l_A_219 | 1g8l | A | 220 | 240 | VINLGIIRDDPHALRAAFIEA | EEEEEEE-S-HHHHHHHHHHH | xbxaexxxxbaaaaaaaaaaa |
1j5v_A_49 | 1j5v | A | 49 | 69 | AYFVTKLPNNPLGDAAAGHLR | EEEEEEE-SSHHHHHHHHHHH | xbbbbbbxxbaaaaaaaaaaa |
1the_A_147 | 1the | A | 147 | 167 | GYTSYSVSDSEKEIMAEIYKN | EEEEEEE-S-HHHHHHHHHHH | xabbbxbxxbaaaaaaaaaaa |
1uz5_A_222 | 1uz5 | A | 223 | 243 | GIFMGVARDDKESLKALIEKA | EEEEEEE-SSHHHHHHHHHHH | xbxaebbxxbaaaaaaaaaaa |
1v1a_A_50 | 1v1a | A | 50 | 70 | VGFVGRVGEDELGAMVEERLR | EEEEEEE-SSHHHHHHHHHHH | bbbbbbbpxbaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1g8l_A_219 | 1g8l | A | GOLGLYCEROL | E - 219 |
1g8l_A_219 | 1g8l | A | GOLGLYCEROL | D - 228 |
1g8l_A_219 | 1g8l | A | GOLGLYCEROL | D - 229 |
1g8l_A_219 | 1g8l | A | GOLGLYCEROL | P - 230 |
1g8l_A_219 | 1g8l | A | GOLGLYCEROL | H - 231 |
1j5v_A_49 | 1j5v | A | MSESELENOMETHIONINE | A - 49 |
1j5v_A_49 | 1j5v | A | 2OFFERROUS ION, 2 WATERS COORDINATED | Y - 50 |
1j5v_A_49 | 1j5v | A | NINICKEL (II) ION | A - 63 |
1j5v_A_49 | 1j5v | A | NI3NICKEL (II) ION, 3 WATERS COORDINATED | A - 63 |
1j5v_A_49 | 1j5v | A | MSESELENOMETHIONINE | A - 64 |
1j5v_A_49 | 1j5v | A | NINICKEL (II) ION | G - 66 |
1j5v_A_49 | 1j5v | A | NI3NICKEL (II) ION, 3 WATERS COORDINATED | G - 66 |
1j5v_A_49 | 1j5v | A | NINICKEL (II) ION | H - 67 |
1j5v_A_49 | 1j5v | A | NI3NICKEL (II) ION, 3 WATERS COORDINATED | H - 67 |
1j5v_A_49 | 1j5v | A | NINICKEL (II) ION | L - 68 |
1j5v_A_49 | 1j5v | A | NI3NICKEL (II) ION, 3 WATERS COORDINATED | L - 68 |
1j5v_A_49 | 1j5v | A | NINICKEL (II) ION | K - 70 |
1j5v_A_49 | 1j5v | A | NI3NICKEL (II) ION, 3 WATERS COORDINATED | K - 70 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1uz5_A_222 | 1uz5 | A | AC3SO4 BINDING SITE FOR CHAIN A | G - 223 |
1uz5_A_222 | 1uz5 | A | AC3SO4 BINDING SITE FOR CHAIN A | F - 225 |
1uz5_A_222 | 1uz5 | A | AC5SO4 BINDING SITE FOR CHAIN A | D - 231 |
Clusters included in this Subclass |
CLUSTER: EH.2.205 |
CLUSTER: EH.4.160 |