Information on SUBCLASS 3.1.1 |
Subclass Accession number: 162
Subclass: 3.1.1 Type: HH alpha-alpha DB: ArchDB-KI |
Number of loops: 4 Average sequence ID (%) : 100.0 +/- 0.0 Average RMSD (Å) : 0.12 +/- 0.02 Consensus geometry
|
Consensus Sequence: | LGASETI |
(φψ)-conformation: | aabplaa |
Pattern: | [M] | [T] | [Y] | [W] | [R] | [V] | [L] | [G] | [A] | [S] | [E] | [T] | [I] | [A] | [N] | [I] | [Y] | [T] | [T] | [Q] | [H] | [R] | [L] | [D] |
Conservation: | -0.204 | -0.204 | 1.021 | 3.470 | -0.204 | -0.816 | -0.816 | 0.408 | -0.816 | -0.816 | -0.204 | -0.204 | -0.816 | -0.816 | 0.408 | -0.816 | 1.021 | -0.204 | -0.204 | -0.204 | 1.633 | -0.204 | -0.816 | 0.408 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1kim_A_85 | 1kim | A | 85 | 108 | MTYWRVLGASETIANIYTTQHRLD | HHHHHTTSSS-HHHHHHHHHHHHH | aaaaaaaabxlaaaaaaaaaaaaa |
1qhi_A_85 | 1qhi | A | 85 | 108 | MTYWRVLGASETIANIYTTQHRLD | HHHHHTTSSS-HHHHHHHHHHHHH | aaaaaaaabxlaaaaaaaaaaaaa |
1vtk_*_85 | 1vtk | - | 85 | 108 | MTYWRVLGASETIANIYTTQHRLD | HHHHHTTSSSSHHHHHHHHHHHHH | aaaaaaaabxlaaaaaaaaaaaaa |
2ki5_A_85 | 2ki5 | A | 85 | 108 | MTYWRVLGASETIANIYTTQHRLD | HHHHHTTSSS-HHHHHHHHHHHHH | aaaaaaaabxlaaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1kim_A_85 | 1kim | A | THMTHYMIDINE | W - 88 |
1kim_A_85 | 1kim | A | THMTHYMIDINE | I - 97 |
1kim_A_85 | 1kim | A | THMTHYMIDINE | I - 100 |
1kim_A_85 | 1kim | A | THMTHYMIDINE | Y - 101 |
1vtk_*_85 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | M - 85 |
1vtk_*_85 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | W - 88 |
1vtk_*_85 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | I - 97 |
1vtk_*_85 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | I - 100 |
1vtk_*_85 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | Y - 101 |
2ki5_A_85 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | W - 88 |
2ki5_A_85 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | I - 97 |
2ki5_A_85 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | I - 100 |
2ki5_A_85 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | Y - 101 |
Bibliographic annotations |
Clusters included in this Subclass |
CLUSTER: HH.5.7 |