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Information on SUBCLASS 3.6.1
Subclass Accession number: 2327
Subclass: 3.6.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 9.8 +/- 11.0
Average RMSD (Å) : 0.836 +/- 0.242

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXXpXX
(φψ)-conformation: aapabaa
Pattern: x[cfgiklv][agikl][afklv][almvwy][adenqrs]xx[ekpqt][cdenst][degkqs][cenqw][cdekst][akrs]xxxx[ehknrt]
Conservation:-1.741-0.7830.661-0.1610.1410.348-0.593-0.3380.0651.7770.3452.2280.2850.868-1.461-0.951-1.0360.0400.304
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a6j_A_1341a6j   A136154ICRRLRAAQSDEELYQIITHHHHHHH--SHHHHHHHHHaaaaaaapabaaaaaaaaa
1f7c_A_2751f7c   A280298SFIKAAKLENQESRVSEIHHHHHHHT-SSHHHHHHHHHaaaaaaapaxaaaaaaaaa
1hn0_A_4501hn0   A453471HLALLLLEPDDQKRINLVNHHHHHHT-SSHHHHHHHHHaaaaaaapaxaaaaaaaaa
1jr8_A_351jr8   A4563IGLYAELYPCGECSYHFVKHHHHHHH-SSHHHHHHHHHaaaaaaapabaaaaaaaaa
1js8_A_26461js8   A26502668QIALALEQTDFCDFEIQFEHHHHHHH--SHHHHHHHHHaaaaaaaxabaaaaaaaaa
1k32_A_6821k32   A694712WKLARDNYWNEAVAKEISEHHHHHHH-S-HHHHHHHHHaaaaaaapabaaaaaaaaa
1m0u_A_1281m0u   A147165KIAVVSYEPEDEIKEKKLVHHHHHHT-SSHHHHHHHHHaaaaaaapaxaaaaaaaaa
1mty_B_2251mty   B231249VEGLWQEVFDWNESAFSVHHHHHHHT---HHHHHHHHHaaaaaaabaxaaaaaaaaa
1mty_G_871mty   G94112TVAKMNAAKDKWEAEKIHIHHHHHHH--SHHHHHHHHHaaaaaaapabaaaaaaaaa
1omw_A_801omw   A88106EIKKYEKLETEEERLVCSRHHHHHHT--SHHHHHHHHHaaaaaaaxabaaaaaaaaa
1qsa_A_5721qsa   A572590AVAFVESIPFSETRGYVKNHHHHHHH-S-HHHHHHHHHaaaaaaapaxaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 48
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 52
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE C - 54
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 56
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE C - 57
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 58
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 60
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 61
1js8_A_26461js8   A     CUOCU2-O2 CLUSTER H - 2671
1js8_A_26461js8   A     CUOCU2-O2 CLUSTER N - 2672
1js8_A_26461js8   A     CUOCU2-O2 CLUSTER H - 2675
1m0u_A_1281m0u   A     GTTGLUTATHIONE N - 142
1m0u_A_1281m0u   A     GTTGLUTATHIONE R - 145
1qsa_A_5721qsa   A     GOLGLYCEROL A - 572
1qsa_A_5721qsa   A     GOLGLYCEROL V - 573
1qsa_A_5721qsa   A     GOLGLYCEROL A - 574
1qsa_A_5721qsa   A     GOLGLYCEROL Y - 587
1qsa_A_5721qsa   A     GOLGLYCEROL Y - 594
1qsa_A_5721qsa   A     GOLGLYCEROL D - 595
1qsa_A_5721qsa   A     GOLGLYCEROL A - 596
1qsa_A_5721qsa   A     GOLGLYCEROL R - 599

Clusters included in this Subclass
CLUSTER: HH.2.159
CLUSTER: HH.3.58
CLUSTER: HH.4.58