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Information on SUBCLASS 5.39.1
Subclass Accession number: 3276
Subclass: 5.39.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 23.5 +/- 30.6
Average RMSD (Å) : 1.280 +/- 0.130

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: VcXpphXhp
(φψ)-conformation: bpablbpaa
Pattern: xxxxxxxxxxxxxxxxx
Conservation:-0.8602.4240.953-1.114-0.6331.529-1.114-0.352-0.6060.2190.959-0.543-0.5440.4090.468-0.834-0.361
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1hsk_A_2751hsk   A275291MVNVDNGTATDYENLIHEEE-SS--HHHHHHHHHbxxablxbaaaaaaaaa
1m7g_A_1801m7g   A181197HVKNYELPVQDAVKQIIEEE-SSS-HHHHHHHHHbbxablbxaaaaaaaaa
1m7g_B_1801m7g   B181197HVKNYELPVQDAVKQIIEEE-SS--HHHHHHHHHbbxablbxaaaaaaaaa
1olt_A_1361olt   A145161EVDPREIELDVLDHLRAEE-SSS--THHHHHHHHxbxablbxaaaaaaaaa
1uxy_*_2911uxy   -292308LINEDNAKSEDVVQLAHEEE-SS--HHHHHHHHHxbxablxxaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m7g_A_1801m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE N - 184
1m7g_B_1801m7g   B     ADPADENOSINE-5'-DIPHOSPHATE N - 184
1m7g_A_1801m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE Y - 185
1m7g_B_1801m7g   B     ADPADENOSINE-5'-DIPHOSPHATE Y - 185
1m7g_A_1801m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE E - 186
1m7g_B_1801m7g   B     ADPADENOSINE-5'-DIPHOSPHATE E - 186
1m7g_A_1801m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE L - 187
1m7g_B_1801m7g   B     ADPADENOSINE-5'-DIPHOSPHATE L - 187
1m7g_B_1801m7g   B     CRYPROPANE-1,2,3-TRIOL L - 187
1m7g_A_1801m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE P - 188
1m7g_B_1801m7g   B     ADPADENOSINE-5'-DIPHOSPHATE P - 188
1m7g_B_1801m7g   B     CRYPROPANE-1,2,3-TRIOL P - 188
1m7g_A_1801m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE V - 189
1m7g_B_1801m7g   B     ADPADENOSINE-5'-DIPHOSPHATE V - 189
1m7g_B_1801m7g   B     CRYPROPANE-1,2,3-TRIOL V - 189
1m7g_B_1801m7g   B     CRYPROPANE-1,2,3-TRIOL Q - 190
1m7g_B_1801m7g   B     CRYPROPANE-1,2,3-TRIOL D - 191
1m7g_A_1801m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE A - 192
1olt_A_1361olt   A     SAMS-ADENOSYLMETHIONINE E - 145
1olt_A_1361olt   A     SAMS-ADENOSYLMETHIONINE V - 146
1olt_A_1361olt   A     FS4IRON/SULFUR CLUSTER D - 147
1olt_A_1361olt   A     SAMS-ADENOSYLMETHIONINE D - 147
1olt_A_1361olt   A     SAMS-ADENOSYLMETHIONINE P - 148
1olt_A_1361olt   A     FS4IRON/SULFUR CLUSTER R - 149
1olt_A_1361olt   A     SAMS-ADENOSYLMETHIONINE R - 149
1uxy_*_2911uxy   *     EPUURIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID V - 291
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1olt_A_1361olt   A AC3SAM BINDING SITE FOR CHAIN AE - 145
1olt_A_1361olt   A AC1FS4 BINDING SITE FOR CHAIN AR - 149

Clusters included in this Subclass
CLUSTER: EH.6.93