Information on SUBCLASS 6.40.1 |
Subclass Accession number: 3380
Subclass: 6.40.1 Type: EH beta-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 28.7 +/- 23.6 Average RMSD (Å) : 0.440 +/- 0.114 Consensus geometry
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Consensus Sequence: | phpchXHhhh |
(φψ)-conformation: | bbplbpabaa |
Pattern: | [AET] | [FLMY] | [hlv] | [STV] | [FIV] | [EKRY] | [DGN] | [AC] | [GS] | [H] | [FLM] | [LTV] | [MP] | [FTVW] | [DEH] |
Conservation: | -0.391 | -0.180 | -1.209 | -0.222 | -0.008 | -0.594 | -0.143 | 0.496 | 0.195 | 3.269 | -0.005 | -0.327 | -0.093 | -0.911 | 0.122 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ac5_*_438 | 1ac5 | - | 439 | 453 | TFVSVYNASHMVPFD | EEEEETT--SSHHHH | bbbbxxvbxabaaaa |
1ehy_A_265 | 1ehy | A | 266 | 280 | TMETIEDCGHFLMVE | EEEEETT--S-HHHH | bbbbbxvbxabaaaa |
1gxs_B_404 | 1gxs | B | 405 | 419 | TYVTVRGAGHLVPVH | EEEEETT--SSHHHH | bbbbbxvbxaxaaaa |
1ivy_A_419 | 1ivy | A | 420 | 434 | AFLTIKGAGHMVPTD | EEEEETT--SSHHHH | bbbbbxvxxabaaaa |
1mtz_A_262 | 1mtz | A | 262 | 276 | ELHVFRDCSHLTMWE | EEEEETT--S-HHHH | bbbbxxvbFaxaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ac5_*_438 | 1ac5 | * | NAGN-ACETYL-D-GLUCOSAMINE | Y - 444 |
1ac5_*_438 | 1ac5 | * | NAGN-ACETYL-D-GLUCOSAMINE | N - 445 |
1gxs_B_404 | 1gxs | B | DKADECANOIC ACID | H - 414 |
1gxs_B_404 | 1gxs | B | DKADECANOIC ACID | L - 415 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ac5_*_438 | 1ac5 | * | 448MEMBER OF CATALYTIC TRIAD. | H - 448 |
1gxs_B_404 | 1gxs | B | DK1DKA BINDING SITE FOR DIMER AB | H - 414 |
1gxs_B_404 | 1gxs | B | DK1DKA BINDING SITE FOR DIMER AB | L - 415 |
1ivy_A_419 | 1ivy | A | CATCATALYTIC TRIAD SERINE CARBOXYPEPTIDASE. | H - 429 |
Clusters included in this Subclass |
CLUSTER: EH.5.140 |