ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.54.1

Subclass Accession number: 3394
Subclass: 6.54.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
SCOP : 52342 (>75 %) 52343 (>75 %) 52344 (>75 %)

Number of loops: 3

Average sequence ID (%) : 17.3 +/- 14.6
Average RMSD (Å) : 0.533 +/- 0.153

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	hXRpXXphXX
(φψ)-conformation:	bbabaaapaa

Pattern:	[ILM]	x	[IL]	[VY]	[HWY]	[AG]	[AGN]	[R]	[ETY]	[AE]	[ADQ]	[DH]	[IL]	x	x	x	[CDP]	[EL]	[LM]	[DEQ]	[AER]	[LW]	[AES]	[AKL]	[EKR]
Conservation:	0.537	-0.999	0.997	0.135	1.209	0.422	-0.519	2.649	-0.999	0.196	-0.807	0.968	1.002	-1.191	-1.575	-0.460	-0.903	-0.587	1.106	0.633	-0.711	0.164	-0.423	-1.191	0.345

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fdr_*_136	1fdr	-	137	161	LVLVHAARYAADLSYLPLMQELEKR	EEEEEEESSGGG-TTHHHHHHHHHH	bbbbbbbabaaaxaaaaaaaaaaaa
1qfj_A_133	1qfj	A	133	157	ITIYWGGREEQHLYDLCELEALSLK	EEEEEEESSGGG-TTHHHHHHHHHH	bbbbbbbabaaaxaaaaaaaaaaaa
2cnd_*_168	2cnd	-	169	193	MHLVYANRTEDDILLRDELDRWAAE	EEEEEEES-GGG-TTHHHHHHHHHH	bbbbbxbabaaaxaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
2cnd_*_168	2cnd	*	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 182

Clusters included in this Subclass