ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 9.12.1

Subclass Accession number: 3528
Subclass: 9.12.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 25.0 +/- 29.9
Average RMSD (Å) : 0.975 +/- 0.618

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XhXhXpppcXXhh
(φψ)-conformation:	bbpppabaappaa

Pattern:	[KQS]	x	[SY]	[AKQ]	[AGV]	[ALT]	[PWY]	[PS]	x	[HKNS]	[DKNS]	[DNQ]	x	[AN]	[CW]	[ALM]	[AGN]	[AR]
Conservation:	0.074	-1.117	0.747	-0.296	-0.814	-0.670	-0.462	1.205	-1.324	-0.378	-0.378	0.423	0.105	0.318	3.074	-0.259	-0.594	0.347

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bd2_D_174	1bd2	D	175	192	SNSAVAWSNKSDFACANA	EEEEEEE---SS--HHHH	bbbbbbbbabaaxbaaaa
1tl2_A_14	1tl2	A	14	31	KFYQGTYPQNKNDNWLAR	EEEEES---STT--HHHH	bbbbexxxabaaxxaaaa
1tl2_A_155	1tl2	A	155	172	QFYKALPPVSNQDNWLAR	EEEEE---SSTT--HHHH	xbbbbxwxabaaxxaaaa
1tl2_A_61	1tl2	A	61	78	KIYKGTPPTHDNDNWMGR	EEEEES---STT--HHHH	bbbbexwxabaaxxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1tl2_A_14	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 15
1tl2_A_14	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 23
1tl2_A_14	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	K - 24
1tl2_A_14	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 25
1tl2_A_14	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 26
1tl2_A_14	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 27
1tl2_A_14	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	W - 28
1tl2_A_14	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 29
1tl2_A_14	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 30
1tl2_A_61	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	I - 62
1tl2_A_61	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	H - 70
1tl2_A_61	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 71
1tl2_A_61	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 72
1tl2_A_61	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 73
1tl2_A_61	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 74
1tl2_A_61	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	W - 75
1tl2_A_61	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	M - 76
1tl2_A_61	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	G - 77
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 156
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	P - 162
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 164
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 165
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 166
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 167
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 168
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	W - 169
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 170
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 171

Clusters included in this Subclass

CLUSTER: EH.8.49