ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 29.1.1

Subclass Accession number: 3639
Subclass: 29.1.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 6.3 (>75 %)  6.3 (>75 %)  6.3.2 (>75 %)  6.3.2 (>75 %)  6.3.2.19 6.3.2.19
GO : GO:0004840 (>75 %)  GO:0004840 (>75 %)  GO:0004842 (>75 %)  GO:0004842 (>75 %)  GO:0008639 (>75 %)  GO:0008639 (>75 %)  GO:0016874 (>75 %)  GO:0016874 (>75 %)  GO:0016879 (>75 %)  GO:0016879 (>75 %)  GO:0016881 (>75 %)  GO:0016881 (>75 %)
SCOP : 54494 (>75 %)  54494 (>75 %)  54495 (>75 %)  54495 (>75 %)  54496 (>75 %)  54496 (>75 %)

Number of loops: 3

Average sequence ID (%) : 50.8 +/- 4.3
Average RMSD (Å) : 0.400 +/- 0.000

Consensus geometry

d (Å): 17

delta (°): 135-180

theta (°): 0-45

rho (°): 180-225

Consensus Sequence:	pFXpXhhHPNhpXXGpICLDILpppWphXhphX
(φψ)-conformation:	bpappbpbaabpaagpbbbaaaaaapbaapbaa

Pattern:	[KTV]	[V]	[KR]	[F]	[MTV]	[ST]	[KPR]	[CIM]	[FWY]	[H]	[P]	[N]	[IV]	[DY]	[AKQ]	x	[G]	[NRS]	[I]	[C]	[L]	[D]	[I]	[L]	[KQ]	[DEN]	[KNQ]	[W]	[ST]	[AP]	x	[LY]	[DQ]	[IV]	[AR]	[AT]	[IV]	[L]	[LT]	[S]	[IL]	[Q]	[AS]	[L]
Conservation:	-1.246	0.173	-0.024	1.085	-0.942	-0.325	-0.892	-0.841	0.173	1.997	1.541	1.085	-0.047	-0.818	-1.044	-1.550	1.085	-0.892	0.173	2.453	0.173	1.085	0.173	0.173	-0.250	-0.486	-0.740	3.365	-0.410	-0.411	-1.246	-0.421	-0.297	-0.046	-0.764	-0.545	-0.046	0.173	-0.851	0.173	-0.263	0.629	-0.482	0.173

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1j7d_B_68	1j7d	B	68	111	KVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQAL	EEEE-S---BTTB-TT-BB--GGGTTS--TTS-HHHHHHHHHHH	bbbxabxbxbaabxaavxbbbaaaaaaxbaaaeaaaaaaaaaaa
2aak_*_69	2aak	-	69	112	TVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSL	EEEESS----TTB-TTSBB--GGGTTS--TT--HHHHHHHHHHH	xbbxaxxbbbaabxaagxbxbaaaaaaxbaapbaaaaaaaaaaa
2e2c_*_95	2e2c	-	95	138	VVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSL	EEEESS---BTTB-TT-BB--GGGTTT--TT--HHHHHHHHHHH	xbbxaxpbxbaabxaavxbbbaaaFaaxbaaxbaaaaaaaaaaa

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
2aak_*_69	2aak	*	C88CYS 88 BINDS A UBIQUITIN MOLECULE THROUGH A THIOLESTER BOND WITH THE C TERMINUS OF UBIQUITIN.	C - 88

Clusters included in this Subclass