Information on SUBCLASS 5.36.1 |
Subclass Accession number: 4040
Subclass: 5.36.1 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 51.0 +/- 18.8 Average RMSD (Å) : 0.275 +/- 0.050 Consensus geometry
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Consensus Sequence: | ppFGGRXpF |
(φψ)-conformation: | bpapababb |
Pattern: | [KQRS] | [NQS] | [F] | [G] | [GQ] | [R] | [AS] | [AQRS] | [F] | [AGW] | [G] | [EPQR] | [IV] | x | [T] | [LV] | [KR] |
Conservation: | -0.837 | -0.586 | 1.336 | 1.336 | -0.484 | 0.846 | -0.377 | -1.113 | 1.336 | -1.082 | 1.336 | -0.991 | 0.134 | -1.572 | 0.846 | -0.312 | 0.185 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1j3l_A_23 | 1j3l | A | 23 | 39 | KSFGGRARFAGRVRTLR | EE-SSBSSEEEEEEEEE | xxaxababbbexxbbbb |
1nxj_A_27 | 1nxj | A | 27 | 43 | RQFGGRSQFAGPISTVR | EE-SSBS-EEEEEEEEE | bxaxababbbexxbbbb |
1q5x_A_24 | 1q5x | A | 24 | 40 | SNFGGRASFGGQIITVK | EE-SS-SSEEEEEEEEE | bxaxababbbexbbxbb |
1vi4_A_25 | 1vi4 | A | 25 | 41 | QNFGQRSAFWGEIVTVR | EE-SS-S-EEEEEEEEE | bxaxaxabbbexxbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1j3l_A_23 | 1j3l | A | MSESELENOMETHIONINE | K - 23 |
1j3l_A_23 | 1j3l | A | MSESELENOMETHIONINE | S - 24 |
1nxj_A_27 | 1nxj | A | GLVGLYOXYLIC ACID | R - 27 |
1nxj_A_27 | 1nxj | A | GLVGLYOXYLIC ACID | Q - 28 |
1vi4_A_25 | 1vi4 | A | MSESELENOMETHIONINE | F - 27 |
1vi4_A_25 | 1vi4 | A | MSESELENOMETHIONINE | G - 28 |
1vi4_A_25 | 1vi4 | A | MSESELENOMETHIONINE | Q - 29 |
1vi4_A_25 | 1vi4 | A | MSESELENOMETHIONINE | R - 30 |
1vi4_A_25 | 1vi4 | A | MSESELENOMETHIONINE | S - 31 |
1vi4_A_25 | 1vi4 | A | MSESELENOMETHIONINE | A - 32 |
1vi4_A_25 | 1vi4 | A | MSESELENOMETHIONINE | F - 33 |
1vi4_A_25 | 1vi4 | A | MSESELENOMETHIONINE | W - 34 |
1vi4_A_25 | 1vi4 | A | MSESELENOMETHIONINE | I - 37 |
Clusters included in this Subclass |
CLUSTER: AR.5.162 |