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Information on SUBCLASS 5.61.1
Subclass Accession number: 4065
Subclass: 5.61.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003676 (>50 %)  GO:0003677 (>50 %)  
SCOP : 49319 (>50 %)  49320 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 20.5 +/- 20.3
Average RMSD (Å) : 0.833 +/- 0.321

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: VphXXhXhX
(φψ)-conformation: bbaaabppb
Pattern: [V][DNS][AC][AKT]x[AV]x[CP]xx[GI]xx
Conservation:1.7760.3991.814-0.461-0.7200.373-0.6331.054-0.892-0.720-0.541-0.299-1.150
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gtr_A_4591gtr   A459471VSAAHALPVEIRLEETTT-EEEEEEEbpaaaxxwbxbbx
1noa_*_821noa   -8698VDCTTAACQVGLSEETTSS-EEEEEEbbaaabxxbbbbb
2mcm_*_812mcm   -8698VNCKVVSCSAGLGEETTTS-EEEEEEbbaaabxbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
2mcm_*_812mcm   *     CACALCIUM ION W - 83
2mcm_*_812mcm   *     MPD2-METHYL-2,4-PENTANEDIOL S - 92
2mcm_*_812mcm   *     MPD2-METHYL-2,4-PENTANEDIOL C - 93
2mcm_*_812mcm   *     MPD2-METHYL-2,4-PENTANEDIOL S - 94
2mcm_*_812mcm   *     MPD2-METHYL-2,4-PENTANEDIOL A - 95
2mcm_*_812mcm   *     MPD2-METHYL-2,4-PENTANEDIOL G - 96
2mcm_*_812mcm   *     MPD2-METHYL-2,4-PENTANEDIOL L - 97
2mcm_*_812mcm   *     MPD2-METHYL-2,4-PENTANEDIOL G - 98

Clusters included in this Subclass
CLUSTER: AR.5.123