Information on SUBCLASS 3.5.4 |
Subclass Accession number: 4707
Subclass: 3.5.4 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 30.3 +/- 21.8 Average RMSD (Å) : 0.329 +/- 0.125 Consensus geometry
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Consensus Sequence: | XXAXpXX |
(φψ)-conformation: | aapabaa |
Pattern: | [RST] | [AS] | [ILV] | x | [dgkqr] | [A] | [ADEP] | [DENS] | [LPY] | x | [AEKS] | [AV] | [AILY] | [AKRS] | [AEGKQ] | [FILV] | x |
Conservation: | -0.125 | 1.019 | 1.363 | -1.127 | -1.520 | 2.157 | -0.534 | 0.839 | 0.089 | -1.045 | -0.248 | 1.012 | -0.714 | 0.031 | -0.823 | 0.271 | -0.645 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dbt_A_215 | 1dbt | A | 215 | 231 | RSITKAEDPVKAYKAVR | HHHHTSS-HHHHHHHHH | aaaaaxabaaaaaaaaa |
1dvj_A_203 | 1dvj | A | 203 | 219 | RSIYLADNPAAAAAGII | HHHHTSSSHHHHHHHHH | aaaaaxabaaaaaaaaa |
1h1y_A_201 | 1h1y | A | 201 | 217 | SSIFGAAEPGEVISALR | HHHHTSS-HHHHHHHHH | aaaaaxabaaaaaaaaa |
1q6o_A_192 | 1q6o | A | 192 | 208 | RSIRDAASPVEAARQFK | HHHHTSS-HHHHHHHHH | aaaaaxabaaaaaaaaa |
1rpx_A_208 | 1rpx | A | 208 | 224 | SAVFGAPDYAEAIKGIK | HHHHTSS-HHHHHHHHH | aaaaaxabaaaaaaaaa |
1vc4_A_237 | 1vc4 | A | 237 | 253 | TSLMRAPDLEAALRELV | HHHHTSS-HHHHHHHHH | aaaaaxabaaaaaaaaa |
2tps_A_209 | 2tps | A | 209 | 225 | SAISQAEDPESAARKFR | HHHHTSS-HHHHHHHHH | aaaaaxabaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dbt_A_215 | 1dbt | A | U5PURIDINE-5'-MONOPHOSPHATE | R - 215 |
1dbt_A_215 | 1dbt | A | U5PURIDINE-5'-MONOPHOSPHATE | S - 216 |
1dbt_A_215 | 1dbt | A | U5PURIDINE-5'-MONOPHOSPHATE | T - 218 |
1dvj_A_203 | 1dvj | A | UP66-AZA URIDINE 5'-MONOPHOSPHATE | R - 203 |
1dvj_A_203 | 1dvj | A | UP66-AZA URIDINE 5'-MONOPHOSPHATE | S - 204 |
1dvj_A_203 | 1dvj | A | UP66-AZA URIDINE 5'-MONOPHOSPHATE | Y - 206 |
1q6o_A_192 | 1q6o | A | LG6L-GULURONIC ACID 6-PHOSPHATE | R - 192 |
1q6o_A_192 | 1q6o | A | LG6L-GULURONIC ACID 6-PHOSPHATE | S - 193 |
1q6o_A_192 | 1q6o | A | LG6L-GULURONIC ACID 6-PHOSPHATE | R - 195 |
2tps_A_209 | 2tps | A | TPSTHIAMIN PHOSPHATE | S - 209 |
2tps_A_209 | 2tps | A | TPSTHIAMIN PHOSPHATE | A - 210 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h1y_A_201 | 1h1y | A | SO1SO4 BINDING SITE FOR CHAIN A | S - 201 |
Clusters included in this Subclass |
CLUSTER: HH.3.127 |
CLUSTER: HH.4.43 |