Information on SUBCLASS 3.6.5 |
Subclass Accession number: 4718
Subclass: 3.6.5 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 11.1 +/- 10.8 Average RMSD (Å) : 1.000 +/- 0.100 Consensus geometry
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Consensus Sequence: | XpXpcXX |
(φψ)-conformation: | aabapaa |
Pattern: | x | [SY] | [NSY] | x | x | [ER] | [FV] | x | [EKT] | [EL] | [AIT] | [GIV] | [KPQ] | [NQT] | [ILT] | [EQT] | [DN] | [EPQ] | x | [KL] | [KR] | [AER] | [ADK] | [ALM] | [EPS] | x | [AV] |
Conservation: | -1.195 | 0.147 | -0.379 | -0.137 | -1.059 | 1.494 | 0.555 | 0.165 | -0.107 | -0.687 | -0.651 | -1.059 | 0.165 | 0.029 | -0.107 | 0.165 | 2.718 | 0.437 | -1.467 | -0.137 | 2.594 | -0.515 | -0.923 | -0.107 | -0.243 | -0.515 | 0.821 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dq3_A_303 | 1dq3 | A | 303 | 329 | YSSLLRFYELIGKNLQNEEKREKLEKV | HHHHHHHHHHTGGG-S-HHHHHHHHHH | aaaaaaaaaaaaaaxaxaaaaaaaaaa |
1oc7_A_103 | 1oc7 | A | 103 | 129 | NYYRSEVHTLAIPQITDPALRAAASAV | HHHHHHHHHTTGGG---HHHHHHHHHH | aaaaaaaaaaaaaabaxaaaaaaaaae |
1rke_A_41 | 1rke | A | 51 | 77 | VSNLVRVGKETVQTTEDQILKRDMPPA | HHHHHHHHHTTTTT---HHHHHHHHHH | aaaaaaaaaaaaaabaxaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1oc7_A_103 | 1oc7 | A | DMFDIMETHYLFORMAMIDE | N - 103 |
1oc7_A_103 | 1oc7 | A | DMFDIMETHYLFORMAMIDE | R - 106 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1oc7_A_103 | 1oc7 | A | DMFDMF BINDING SITE FOR CHAIN A | R - 106 |
Clusters included in this Subclass |
CLUSTER: HH.8.107 |