ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.48.1

Subclass Accession number: 4859
Subclass: 4.48.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.14 (>50 %)  1.14.99 (>50 %)  1.14.99.1
GO : GO:0004601 (>50 %)  GO:0004666 (>50 %)  GO:0016684 (>50 %)  GO:0016701 (>50 %)  GO:0016702 (>50 %)  GO:0016705 (>50 %)  GO:0051213 (>50 %)
SCOP : 48112 (>50 %)  48113 (>50 %)  48132 (>50 %)

Number of loops: 3

Average sequence ID (%) : 18.7 +/- 26.6
Average RMSD (Å) : 0.367 +/- 0.115

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 45-90

rho (°): 0-45

Consensus Sequence:	XXpXpXXc
(φψ)-conformation:	aalpppaa

Pattern:	x	x	[KV]	[AD]	[KMV]	x	[ASV]	[IK]	[DK]	[EQR]	[DS]	[GR]	x	[ELM]	[EKR]	x	[QY]	[PS]	x	[DN]	[EK]	[IY]	[DR]	[EK]	x
Conservation:	-1.343	-0.029	-0.400	-0.247	-0.577	-1.672	-0.577	-0.870	0.725	0.628	0.694	0.115	-1.343	-0.796	0.628	-1.015	0.738	1.368	-1.124	1.889	1.374	1.005	0.115	1.374	-0.660

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cvu_A_445	1cvu	A	445	469	QAVAKASIDQSREMKYQSLNEYRKR	HHHHHHHHHHHHHTT---HHHHHHH	aaaaaaaaaaaaaalxxpaaaaaaa
1m1n_B_18	1m1n	B	19	43	DYKDMLAKKRDGFEEKYPQDKIDEV	HHHHHHHHHHHHHT----HHHHHHH	aaaaaaaaaaaaaalxpwaaaaaaa
1q4g_A_445	1q4g	A	445	469	LHVAVDVIKESRVLRLQPFNEYRKR	HHHHHHHHHHHHHTT---HHHHHHH	aaaaaaaaaaaaaalxxxaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1cvu_A_445	1cvu	A	BOGB-OCTYLGLUCOSIDE	Q - 445
1cvu_A_445	1cvu	A	BOGB-OCTYLGLUCOSIDE	S - 451
1cvu_A_445	1cvu	A	BOGB-OCTYLGLUCOSIDE	Q - 454
1q4g_A_445	1q4g	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 446
1q4g_A_445	1q4g	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 447
1q4g_A_445	1q4g	A	HEMPROTOPORPHYRIN IX CONTAINING FE	D - 450

Clusters included in this Subclass