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Information on SUBCLASS 5.3.3
Subclass Accession number: 4880
Subclass: 5.3.3 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 15.2 +/- 14.8
Average RMSD (Å) : 1.080 +/- 0.363

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XcpXpIpXX
(φψ)-conformation: aapaappaa
Pattern: x[CLW]x[QST][ckl][ftv][DKNS][DEKNS]x[DNQT][IV][DNST]x[epq][EKQ][KL][afv][dgpq]x[LM]x[EKNT]x
Conservation:-1.1410.186-0.9910.471-0.791-0.7980.6470.248-0.5940.1062.3930.707-0.878-0.3141.3960.847-0.982-0.691-1.2491.9760.0150.228-0.792
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ezf_A_641ezf   A78100ALDTLEDDMTISVEKKVPLLHNFHHHHHHH-TTS-HHHHHHHHHHHaaaaaaaxaaxxaaaaaaaaaaa
1hf8_A_391hf8   A4466YLIQCTNEMNVNIPQLADSLFERHHHHHHT-TTS-HHHHHHHHHHHaaaaaaaxaaxxaaaaaaaaaaa
1klx_A_291klx   A2951GCLSLVSNSQINKQKLFQYLSKAHHHHHHT-TTS-HHHHHHHHHHHaaaaaaaxaabxaaaaaaaaaaa
1n5d_A_1511n5d   A152174ELQQKFKSETITEEELVGLMNKFHHHHHHS-SS--HHHHHHHHHHHaaaaaaapaapbaaaaaaaaaaa
1v54_E_81v54   E1436RWVTYFNKPDIDAWELRKGMNTLHHHHHHT-TT--HHHHHHHHHHHaaaaaaapaapxaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ezf_A_641ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID V - 69
1ezf_A_641ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID F - 72
1ezf_A_641ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID Y - 73
1ezf_A_641ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID L - 76
1ezf_A_641ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID R - 77
1ezf_A_641ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID D - 80
1v54_E_81v54   E     PSC(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE D - 8
1v54_E_81v54   E     PSC(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE F - 11
1v54_E_81v54   E     PSC(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE D - 12

Clusters included in this Subclass
CLUSTER: HH.6.123
CLUSTER: HH.7.105