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Information on SUBCLASS 6.28.1
Subclass Accession number: 4971
Subclass: 6.28.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : - (>75 %)  1.11 (>75 %)  1.11.1 (>75 %)  1.11.1.71.14 (>75 %)  1.14.13 (>75 %)  1.14.13.39 (>75 %)  
GO : GO:0004497 (>75 %)  GO:0004517 (>75 %)  GO:0004601 (>75 %)  GO:0005489 (>75 %)  GO:0005515 (>75 %)  GO:0005516 (>75 %)  GO:0010181 (>75 %)  GO:0016684 (>75 %)  GO:0016705 (>75 %)  GO:0016709 (>75 %)  GO:0048037 (>75 %)  GO:0050662 (>75 %)  
SCOP : 48112 (>75 %)  48113 (>75 %)  48114 (>75 %)  56511 (>75 %)  56512 (>75 %)  56513 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 58.7 +/- 15.7
Average RMSD (Å) : 0.250 +/- 0.100

Consensus geometry
d (Å): 17 delta (°): 90-135 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: ppcVpIVDHX
(φψ)-conformation: aalppbbpaa
Pattern: [NW][K][D][KQR][A][ALV][TV][E][IL][N][ILVY][A][V][LY][HY][S][F][KQ]x[ADEQ][GKN][V][ST][I][MV][D][H][HL][AST][A][AST]x[QS][F]x[KL][FH][ELM][DEQR][N][E]x
Conservation:-0.1120.9141.457-0.3700.370-1.044-0.5550.914-0.1461.457-0.9540.3700.370-0.6740.9840.3701.457-0.119-1.387-1.123-1.0420.370-0.2020.370-0.3071.4572.543-0.626-0.7240.370-0.753-1.257-0.5801.457-1.348-0.9760.055-1.225-0.8861.4570.914-1.247
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1jwk_A_4041jwk   A404445WKDRAVTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYHHHHHHHHHHHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHaaaaaaaaaaaaaaaaaaaalbpbbxaaaaaaaaaaaaaaaa
1mjt_A_2631mjt   A263304NKDRALVELNYAVYHSFKKEGVSIVDHLTAAKQFELFERNEAHHHHHHHHHHHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHaaaaaaaaaaaaaaaaaaaavxpbbxaaaaaaaaaaaaaaaa
1om4_A_6251om4   A625666WKDQALVEINIAVLYSFQSDKVTIVDHHSATESFIKHMENEYHHHHHHHHHHHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHaaaaaaaaaaaaaaaaaaaavxpbbxaaaaaaaaaaaaaaaa
1q2o_A_3961q2o   A396437WKDKAAVEINLAVLHSFQLAKVTIVDHHAATVSFMKHLDNEQHHHHHHHHHHHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHaaaaaaaaaaaaaaaaaaaalbpbbxaaaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jwk_A_4041jwk   A     EGLETHYLENE GLYCOL N - 413
1jwk_A_4041jwk   A     EGLETHYLENE GLYCOL V - 414
1jwk_A_4041jwk   A     EGLETHYLENE GLYCOL A - 415
1jwk_A_4041jwk   A     EGLETHYLENE GLYCOL L - 417
1jwk_A_4041jwk   A     EGLETHYLENE GLYCOL H - 418
1jwk_A_4041jwk   A     EGLETHYLENE GLYCOL S - 419
1jwk_A_4041jwk   A     EGLETHYLENE GLYCOL Q - 421
1jwk_A_4041jwk   A     GOLGLYCEROL I - 427
1jwk_A_4041jwk   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 428
1jwk_A_4041jwk   A     GOLGLYCEROL M - 428
1jwk_A_4041jwk   A     GOLGLYCEROL D - 429
1jwk_A_4041jwk   A     GOLGLYCEROL T - 432
1jwk_A_4041jwk   A     GOLGLYCEROL A - 433
1jwk_A_4041jwk   A     GOLGLYCEROL S - 436
1jwk_A_4041jwk   A     GOLGLYCEROL F - 437
1mjt_A_2631mjt   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 287
1mjt_A_2631mjt   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 292
1mjt_A_2631mjt   A     SUCSUCROSE E - 300
1om4_A_6251om4   A     ACTACETATE ION I - 648
1om4_A_6251om4   A     ACTACETATE ION V - 649
1om4_A_6251om4   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 649
1om4_A_6251om4   A     ACTACETATE ION S - 653
1om4_A_6251om4   A     ACTACETATE ION A - 654
1om4_A_6251om4   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 654
1om4_A_6251om4   A     ACTACETATE ION S - 657
1om4_A_6251om4   A     GOLGLYCEROL R - 669
1q2o_A_3961q2o   A     ACTACETATE ION I - 419
1q2o_A_3961q2o   A     ACTACETATE ION V - 420
1q2o_A_3961q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 420
1q2o_A_3961q2o   A     ACTACETATE ION A - 424
1q2o_A_3961q2o   A     ACTACETATE ION A - 425
1q2o_A_3961q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 425
1q2o_A_3961q2o   A     ACTACETATE ION S - 428

Clusters included in this Subclass
CLUSTER: HH.6.89