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Information on SUBCLASS 2.3.3
Subclass Accession number: 520
Subclass: 2.3.3 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 33

Average sequence ID (%) : 15.0 +/- 16.1
Average RMSD (Å) : 0.327 +/- 0.094

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXGpXX
(φψ)-conformation: bbeabb
Pattern: xxx[adegn][adegknqrst]xx[afiklmtv]
Conservation:-0.653-0.431-0.5882.409-0.118-0.437-0.1830.001
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8d_*_1251a8d   -131138SLKGNNLIEEETTEEEbbbeabbb
1b0u_A_71b0u   A1421KRYGGHEVEEETTEEEbbbeaxxa
1brt_*_21brt   -613GQENSTSIEEETTEEEebbeabxx
1dar_*_6311dar   -635642EPRGNAQVEEETTEEEebbeabbb
1dpj_A_781dpj   A8996LSIGDLTIEEETTEEEbbbeaxbb
1f1s_A_9551f1s   A960967QKVGNDYQEEETTEEEbxbeabbb
1f2q_A_1471f2q   A153160GKVWQLDYEEETTEEEbxbeabbb
1f6b_A_631f6b   A6471LTIAGMTFEEETTEEEbbbeabbb
1fp2_A_3351fp2   A340347PLTGFLSLEEETTEEExabeabbb
1gkz_A_1871gkz   A187193.FVGIICT.EETTEEE.bbeaxxa
1hn0_A_9931hn0   A9951002QVSGDNTEEEETTEEEbxbeabbx
1i7q_B_1471i7q   B150157ARFGEMVMEEETTEEEbbbeaxxa
1i9z_A_6801i9z   A686693FDYEDTGLEEETTEEEbbbeabxb
1jgt_A_1191jgt   A125132VRTGDRVLEEETTEEEbbbeabbb
1kxo_A_411kxo   A4855TPEGKSVKEE-SSSEEbwbeabbx
1l2t_A_21l2t   A1118YKMGEEIIEEETTEEEbbbeaxbb
1l4i_A_1501l4i   A155161LKAGNKS.EEETTEE.xbbeaxx.
1lf7_A_531lf7   A5865APQGTAMAEEETTEEEbwbeabbx
1n7v_A_4671n7v   A469476YPEAAYYVEEETTEEEbxbeabbx
1nqj_A_9721nqj   A972979QVDGNKVSEEETTEEEbxbeabbb
1obf_O_3021obf   O302309KVSGRLVKEEETTEEEbbbeaxbb
1oxd_A_1051oxd   A113120KFEGDTLVEEETTEEEbxbeaxxb
1pl3_A_701pl3   A7481WANGNQIVEEETTEEEbxbeabxb
1q0e_A_151q0e   A2128EAKGDTVVEEETTEEEbxbeabbx
1qdm_A_831qdm   A94101VTVGDLVVEEETTEEExbbeabbx
1qfm_A_801qfm   A8087FKKGKRYFEEETTEEEbxbeabbb
1qhv_A_4191qhv   A426433TKCGSQVLEEETTEEEbxbeabbx
1rwh_A_4751rwh   A478485TALGEVAAEEETTEEEbbbeabbb
1sjw_A_641sjw   A7178EERGPWVKEEETTEEEbbbeaxbb
1tig_*_1481tig   -155162KMDGRNMFEEETTEEEbxbeabbb
1vk6_A_1361vk6   A136142.RRDDSIL.EETTEEE.xbeabbx
2fcb_A_1522fcb   A158165GNIGYTLYEEETTEEEbbbeabxb
2por_*_2262por   -238245STFGATTVEEETTEEEbbbeabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b0u_A_71b0u   A     ATPADENOSINE-5'-TRIPHOSPHATE Y - 16
1b0u_A_71b0u   A     ATPADENOSINE-5'-TRIPHOSPHATE H - 19
1b0u_A_71b0u   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 21
1dpj_A_781dpj   A     NAGN-ACETYL-D-GLUCOSAMINE I - 84
1dpj_A_781dpj   A     MANALPHA-D-MANNOSE Q - 86
1dpj_A_781dpj   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 86
1dpj_A_781dpj   A     MANALPHA-D-MANNOSE P - 97
1dpj_A_781dpj   A     MANALPHA-D-MANNOSE K - 98
1dpj_A_781dpj   A     MANALPHA-D-MANNOSE Q - 99
1dpj_A_781dpj   A     MANALPHA-D-MANNOSE D - 100
1dpj_A_781dpj   A     NAGN-ACETYL-D-GLUCOSAMINE D - 100
1f2q_A_1471f2q   A     NAGN-ACETYL-D-GLUCOSAMINE T - 148
1f6b_A_631f6b   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 73
1f6b_A_631f6b   A     MGMAGNESIUM ION D - 75
1f6b_A_631f6b   A     GDPGUANOSINE-5'-DIPHOSPHATE D - 75
1l2t_A_21l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE Y - 11
1l2t_A_21l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 12
1l2t_A_21l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE M - 13
1l2t_A_21l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE I - 18
1l2t_A_21l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE Y - 19
1l2t_A_21l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 20
1lf7_A_531lf7   A     CITCITRIC ACID T - 53
1lf7_A_531lf7   A     CITCITRIC ACID T - 68
1lf7_A_531lf7   A     CITCITRIC ACID R - 70
1obf_O_3021obf   O     CSWCYSTEINE-S-DIOXIDE Y - 314
1oxd_A_1051oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE A - 110
1oxd_A_1051oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE V - 112
1oxd_A_1051oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE N - 121
1pl3_A_701pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 70
1pl3_A_701pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 71
1pl3_A_701pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 72
1qfm_A_801qfm   A     SGMMONOTHIOGLYCEROL F - 80
1qfm_A_801qfm   A     SGMMONOTHIOGLYCEROL F - 87
1qfm_A_801qfm   A     SGMMONOTHIOGLYCEROL F - 89
1rwh_A_4751rwh   A     GOLGLYCEROL L - 480
1rwh_A_4751rwh   A     GOLGLYCEROL G - 481
1rwh_A_4751rwh   A     GOLGLYCEROL E - 482
1rwh_A_4751rwh   A     GOLGLYCEROL V - 483
1sjw_A_641sjw   A     NGVMETHYL 5,7-DIHYDROXY-2-METHYL-4,6,11-TRIOXO-3,4,6,11-TETRAHYDROTETRACENE-1-CARBOXYLATE L - 65
1sjw_A_641sjw   A     NGVMETHYL 5,7-DIHYDROXY-2-METHYL-4,6,11-TRIOXO-3,4,6,11-TETRAHYDROTETRACENE-1-CARBOXYLATE L - 83
1vk6_A_1361vk6   A     MSESELENOMETHIONINE R - 136
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL H - 229
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL Y - 232
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL G - 233
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL L - 234
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL V - 249
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL Q - 250
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL V - 251
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL L - 252

Clusters included in this Subclass
CLUSTER: HA.1.10
CLUSTER: HA.3.34