Information on SUBCLASS 4.28.1 |
Subclass Accession number: 5677
Subclass: 4.28.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 16.7 +/- 14.6 Average RMSD (Å) : 1.400 +/- 0.200 Consensus geometry
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Consensus Sequence: | pXGXXhph |
(φψ)-conformation: | aagbbpbb |
Pattern: | [GRT] | [AD] | [DEK] | [GKL] | [QST] | [AL] | x | x | x | [AIL] | x | [IK] | [ASV] | [AM] | [ES] | x | [G] | x | x | [FP] | [QR] | [FVY] | [AGN] | x |
Conservation: | -0.729 | -0.022 | 0.579 | -1.384 | 0.018 | 0.180 | -0.495 | -0.729 | -0.127 | -0.168 | -0.449 | -0.239 | -0.355 | 0.268 | 0.642 | -0.729 | 3.757 | -1.010 | -0.355 | 0.264 | 1.400 | 0.486 | -0.168 | -0.636 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bvy_F_492 | 1bvy | F | 492 | 515 | TAEGTARDLADIAMSKGFAPQVAT | HHHHHHHHHHHHHHTTT---EEEE | aaaaaaaaaaaaaaaavxbxbbbx |
1in0_A_137 | 1in0 | A | 137 | 160 | RDDLQAVIQLVKSAELGQPFQFNN | HHHHHHHHHHHHHS--SS--EEEE | aaaaaaaaaaaaaxaagbxbbbbl |
1q0p_A_258 | 1q0p | A | 263 | 286 | GAKKSLVNLIEKVASYGVKPRYGL | HHHHHHHHHHHHHHTTT---EEEE | aaaaaaaaaaaaaaaavbbxxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bvy_F_492 | 1bvy | F | FMNFLAVIN MONONUCLEOTIDE | T - 492 |
1bvy_F_492 | 1bvy | F | EDO1,2-ETHANEDIOL | T - 492 |
1bvy_F_492 | 1bvy | F | FMNFLAVIN MONONUCLEOTIDE | A - 493 |
1bvy_F_492 | 1bvy | F | FMNFLAVIN MONONUCLEOTIDE | E - 494 |
1bvy_F_492 | 1bvy | F | EDO1,2-ETHANEDIOL | G - 495 |
1bvy_F_492 | 1bvy | F | EDO1,2-ETHANEDIOL | T - 496 |
1bvy_F_492 | 1bvy | F | EDO1,2-ETHANEDIOL | D - 499 |
Clusters included in this Subclass |
CLUSTER: HE.6.149 |