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Information on SUBCLASS 4.28.1
Subclass Accession number: 5677
Subclass: 4.28.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 16.7 +/- 14.6
Average RMSD (Å) : 1.400 +/- 0.200

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: pXGXXhph
(φψ)-conformation: aagbbpbb
Pattern: [GRT][AD][DEK][GKL][QST][AL]xxx[AIL]x[IK][ASV][AM][ES]x[G]xx[FP][QR][FVY][AGN]x
Conservation:-0.729-0.0220.579-1.3840.0180.180-0.495-0.729-0.127-0.168-0.449-0.239-0.3550.2680.642-0.7293.757-1.010-0.3550.2641.4000.486-0.168-0.636
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bvy_F_4921bvy   F492515TAEGTARDLADIAMSKGFAPQVATHHHHHHHHHHHHHHTTT---EEEEaaaaaaaaaaaaaaaavxbxbbbx
1in0_A_1371in0   A137160RDDLQAVIQLVKSAELGQPFQFNNHHHHHHHHHHHHHS--SS--EEEEaaaaaaaaaaaaaxaagbxbbbbl
1q0p_A_2581q0p   A263286GAKKSLVNLIEKVASYGVKPRYGLHHHHHHHHHHHHHHTTT---EEEEaaaaaaaaaaaaaaaavbbxxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bvy_F_4921bvy   F     FMNFLAVIN MONONUCLEOTIDE T - 492
1bvy_F_4921bvy   F     EDO1,2-ETHANEDIOL T - 492
1bvy_F_4921bvy   F     FMNFLAVIN MONONUCLEOTIDE A - 493
1bvy_F_4921bvy   F     FMNFLAVIN MONONUCLEOTIDE E - 494
1bvy_F_4921bvy   F     EDO1,2-ETHANEDIOL G - 495
1bvy_F_4921bvy   F     EDO1,2-ETHANEDIOL T - 496
1bvy_F_4921bvy   F     EDO1,2-ETHANEDIOL D - 499

Clusters included in this Subclass
CLUSTER: HE.6.149