Information on SUBCLASS 4.36.1 |
Subclass Accession number: 5692
Subclass: 4.36.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 22.0 +/- 24.7 Average RMSD (Å) : 0.740 +/- 0.230 Consensus geometry
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Consensus Sequence: | XhpLchhh |
(φψ)-conformation: | aalalpbb |
Pattern: | [AP] | [AP] | [agl] | x | [GTV] | [AL] | [ADR] | [AIV] | x | x | [AEKQ] | x | [AEL] | [egnr] | [LT] | [GKQ] | x | [alv] | [ACLY] | x |
Conservation: | 2.209 | 1.786 | -1.095 | -0.541 | -0.457 | 0.801 | -0.376 | 0.970 | -0.784 | -0.807 | 0.250 | -0.463 | -0.266 | -0.263 | 1.596 | 0.679 | -0.821 | -0.712 | -0.553 | -1.152 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a05_A_13 | 1a05 | A | 19 | 38 | AARQVLDAVDQAAHLGLRCT | HHHHHHHHHHHHHT---EEE | aaaaaaaaaaaaavavxbbb |
1trb_*_15 | 1trb | - | 15 | 34 | PAGYTAAVYAARANLQPVLI | HHHHHHHHHHHTTT---EEE | aaaaaaaaaaaaavalxbbx |
1umd_A_150 | 1umd | A | 151 | 170 | PPAAGAAISMKLLRTGQVAV | HHHHHHHHHHHHTT----EE | aaaaaaaaaaaaalavxbbb |
1vdc_*_15 | 1vdc | - | 15 | 34 | PAAHTAAIYAARAELKPLLF | HHHHHHHHHHHHTT---EEE | aaaaaaaaaaaaavalxbbx |
1xad_*_12 | 1xad | - | 18 | 37 | AALKVLRALDEAEGLGLAYE | HHHHHHHHHHHHHT---EEE | aaaaaaaaaaaaavavxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1trb_*_15 | 1trb | * | FADFLAVIN-ADENINE DINUCLEOTIDE | P - 15 |
1trb_*_15 | 1trb | * | FADFLAVIN-ADENINE DINUCLEOTIDE | A - 16 |
1trb_*_15 | 1trb | * | FADFLAVIN-ADENINE DINUCLEOTIDE | G - 17 |
1trb_*_15 | 1trb | * | FADFLAVIN-ADENINE DINUCLEOTIDE | I - 34 |
1umd_A_150 | 1umd | A | TDPTHIAMIN DIPHOSPHATE | F - 173 |
1umd_A_150 | 1umd | A | MGMAGNESIUM ION | G - 174 |
1umd_A_150 | 1umd | A | TDPTHIAMIN DIPHOSPHATE | G - 174 |
1vdc_*_15 | 1vdc | * | FADFLAVIN-ADENINE DINUCLEOTIDE | A - 17 |
1vdc_*_15 | 1vdc | * | FADFLAVIN-ADENINE DINUCLEOTIDE | F - 34 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1vdc_*_15 | 1vdc | * | FADFAD BINDING SITE. | P - 15 |
1vdc_*_15 | 1vdc | * | FADFAD BINDING SITE. | A - 16 |
Clusters included in this Subclass |
CLUSTER: HE.5.164 |