Information on SUBCLASS 6.63.1 |
Subclass Accession number: 5928
Subclass: 6.63.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation SCOP : 52820 (>50 %) 52821 (>50 %) 52827 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 27.8 +/- 17.0 Average RMSD (Å) : 0.900 +/- 0.346 Consensus geometry
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Consensus Sequence: | hpppVXXhXX |
(φψ)-conformation: | aabbpplpbb |
Pattern: | [EHQ] | [MY] | [AL] | [EK] | [ENR] | [HN] | [V] | [EKP] | [GS] | [AV] | x | [FR] |
Conservation: | -0.003 | 0.478 | -0.658 | 0.625 | -0.589 | 1.767 | 1.364 | -0.686 | 0.468 | -0.276 | -1.858 | -0.632 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ofu_A_20 | 1ofu | A | 29 | 40 | HMAKNNVEGVEF | HHHHTT--SEEE | aaaaFbbxvbbb |
1okg_A_46 | 1okg | A | 46 | 57 | QYAKEHVKSAIR | HHHH---TT-EE | axNabbxxvxxb |
1rhs_*_43 | 1rhs | - | 46 | 57 | EYLERHVPGASF | HHHHSB-TT-EE | aaaabbppvxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ofu_A_20 | 1ofu | A | GDPGUANOSINE-5'-DIPHOSPHATE | G - 20 |
1ofu_A_20 | 1ofu | A | GDPGUANOSINE-5'-DIPHOSPHATE | G - 21 |
1ofu_A_20 | 1ofu | A | GDPGUANOSINE-5'-DIPHOSPHATE | G - 22 |
1ofu_A_20 | 1ofu | A | GDPGUANOSINE-5'-DIPHOSPHATE | G - 23 |
1ofu_A_20 | 1ofu | A | GDPGUANOSINE-5'-DIPHOSPHATE | N - 25 |
1ofu_A_20 | 1ofu | A | GDPGUANOSINE-5'-DIPHOSPHATE | A - 26 |
1ofu_A_20 | 1ofu | A | GDPGUANOSINE-5'-DIPHOSPHATE | N - 44 |
1okg_A_46 | 1okg | A | MSESELENOMETHIONINE | E - 50 |
1okg_A_46 | 1okg | A | CACALCIUM ION | E - 50 |
1okg_A_46 | 1okg | A | MSESELENOMETHIONINE | H - 51 |
1okg_A_46 | 1okg | A | CACALCIUM ION | H - 51 |
1okg_A_46 | 1okg | A | MSESELENOMETHIONINE | V - 52 |
1okg_A_46 | 1okg | A | CACALCIUM ION | V - 52 |
1okg_A_46 | 1okg | A | MSESELENOMETHIONINE | K - 53 |
1okg_A_46 | 1okg | A | CACALCIUM ION | K - 53 |
1okg_A_46 | 1okg | A | MSESELENOMETHIONINE | I - 56 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ofu_A_20 | 1ofu | A | AC1GDP BINDING SITE FOR CHAIN A | G - 20 |
1ofu_A_20 | 1ofu | A | AC1GDP BINDING SITE FOR CHAIN A | G - 21 |
1ofu_A_20 | 1ofu | A | AC1GDP BINDING SITE FOR CHAIN A | G - 22 |
1ofu_A_20 | 1ofu | A | AC1GDP BINDING SITE FOR CHAIN A | N - 25 |
Clusters included in this Subclass |
CLUSTER: HE.5.198 |