ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.15.1

Subclass Accession number: 6213
Subclass: 3.15.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 13

Average sequence ID (%) : 15.8 +/- 18.3
Average RMSD (Å) : 0.354 +/- 0.151

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XhpcXhX
(φψ)-conformation:	bbllNbb

Pattern:	[ailtv]	[afilv]	[adenqrt]	[DGNS]	x	[iltwy]	x
Conservation:	-0.070	-0.092	0.061	2.118	-0.625	-0.436	-0.957

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a8d_*_354	1a8d	-	354	360	AFNNLDR	EETTTEE	bxllNbx
1bed_*_150	1bed	-	152	158	VVNNRYL	EETTTEE	bblvNbx
1byr_A_97	1byr	A	99	105	IVDNVTV	EETTTEE	bblUNbb
1fp1_D_354	1fp1	D	360	366	RAFNSLG	EETTTEE	bbllNxx
1g5a_A_566	1g5a	A	570	576	IRNNALL	EETTTEE	bbllNbb
1j1n_A_11	1j1n	A	18	24	HFRDKWV	EETTTEE	bbllNbb
1jqz_A_85	1jqz	A	89	95	LEENHYN	EETTTEE	xbllNxb
1jyo_A_26	1jyo	A	30	36	LLDSDIF	EETTTEE	bbUvNbb
1oa4_A_10	1oa4	A	12	18	TIQDRYV	EETTTEE	bbUlNbx
1oxc_A_75	1oxc	A	82	88	ILTNELN	EETTTEE	bbllNxb
1rqp_A_235	1rqp	A	239	245	TLDGVLP	EETTTEE	bbUvNxw
1thg_*_4	1thg	-	6	12	VLNGNEV	EETTTEE	bblgNbx
1uqx_A_74	1uqx	A	81	87	ILANKLN	EETTTEE	bbllNxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1j1n_A_11	1j1n	A	MAVD-MANNURONIC ACID	F - 19
1j1n_A_11	1j1n	A	MAVD-MANNURONIC ACID	R - 20
1j1n_A_11	1j1n	A	LGUL-GLUCURONIC ACID	R - 20
1j1n_A_11	1j1n	A	MAVD-MANNURONIC ACID	D - 21
1j1n_A_11	1j1n	A	LGUL-GLUCURONIC ACID	W - 23
1jqz_A_85	1jqz	A	FMTFORMIC ACID	L - 86
1jqz_A_85	1jqz	A	FMTFORMIC ACID	R - 88
1oxc_A_75	1oxc	A	CACALCIUM ION	S - 94
1oxc_A_75	1oxc	A	FUCFUCOSE	E - 95
1oxc_A_75	1oxc	A	CACALCIUM ION	E - 95
1thg_*_4	1thg	*	NAGN-ACETYL-D-GLUCOSAMINE	T - 4
1thg_*_4	1thg	*	NAGN-ACETYL-D-GLUCOSAMINE	A - 5
1thg_*_4	1thg	*	NAGN-ACETYL-D-GLUCOSAMINE	V - 6
1thg_*_4	1thg	*	NAGN-ACETYL-D-GLUCOSAMINE	V - 12
1thg_*_4	1thg	*	NAGN-ACETYL-D-GLUCOSAMINE	I - 13
1uqx_A_74	1uqx	A	CACALCIUM ION	S - 93
1uqx_A_74	1uqx	A	CACALCIUM ION	E - 94
1uqx_A_74	1uqx	A	MAM1-O-METHYL-ALPHA-D-MANNOSE	E - 94

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1uqx_A_74	1uqx	A	AC2CA BINDING SITE FOR CHAIN A	E - 94

Clusters included in this Subclass

CLUSTER: HA.2.38