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Information on SUBCLASS 4.52.1
Subclass Accession number: 6339
Subclass: 4.52.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 2

Average sequence ID (%) : 5.6 +/- 0.0
Average RMSD (Å) : 0.900 +/- 0.000

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XhpcphXh
(φψ)-conformation: bbplbpbb
Pattern: x[ST][I]x[FY][EK][DN][DS][FG][AN][AY][KP][LT]x[AI][EL]x[KT]
Conservation:-0.8020.5511.678-0.5762.3550.7771.2270.326-0.576-0.576-0.3510.326-0.351-1.253-0.576-1.253-0.802-0.125
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1i4u_A_931i4u   A93110LSIDYENSFAAPLVILETEEEEETTS-EEEEEEEEExxbbbplbxbbwbbxabb
1oxd_A_921oxd   A96113RTIFFKDDGNYKTRAEVKEEEEETTS-EEEEEEEEEbbbxxplbxbbbbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i4u_A_931i4u   A     MPD2-METHYL-2,4-PENTANEDIOL I - 95
1i4u_A_931i4u   A     MPD2-METHYL-2,4-PENTANEDIOL Y - 97
1i4u_A_931i4u   A     MPD2-METHYL-2,4-PENTANEDIOL S - 100
1i4u_A_931i4u   A     MPD2-METHYL-2,4-PENTANEDIOL F - 101
1i4u_A_931i4u   A     MPD2-METHYL-2,4-PENTANEDIOL A - 102
1i4u_A_931i4u   A     MPD2-METHYL-2,4-PENTANEDIOL A - 103
1i4u_A_931i4u   A     MPD2-METHYL-2,4-PENTANEDIOL P - 104
1i4u_A_931i4u   A     MPD2-METHYL-2,4-PENTANEDIOL L - 105
1oxd_A_921oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE Y - 92
1oxd_A_921oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE Q - 94
1oxd_A_921oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE R - 96
1oxd_A_921oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE A - 110
1oxd_A_921oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE V - 112

Clusters included in this Subclass
CLUSTER: HA.3.257