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Information on SUBCLASS 5.28.2
Subclass Accession number: 6408
Subclass: 5.28.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 2

Average sequence ID (%) : 0.0 +/- 0.0
Average RMSD (Å) : 0.900 +/- 0.000

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XhhXpXhhX
(φψ)-conformation: bpppllpb_
Pattern: [RY][EF][CT][TV]x[GY][GY]x[RY]x[AL][CM]x[EY][SW]
Conservation:0.243-0.9711.8600.647-1.779-0.162-0.162-0.5660.243-0.566-0.5661.860-0.9710.2430.647
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1m2t_B_3881m2t   B388402RETTIYGFRDLCMESEEEEEE-GGG-EEEExxbbbxbplvxbxbb
1ors_B_921ors   B94108YFCVRGYDYFAMDYWEEEEEE-GGG-EEEEbbbbxxxpvvxxabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m2t_B_3881m2t   B     GOLGLYCEROL R - 388
1m2t_B_3881m2t   B     GOLGLYCEROL Y - 393
1m2t_B_3881m2t   B     GOLGLYCEROL G - 394
1m2t_B_3881m2t   B     GOLGLYCEROL F - 395
1m2t_B_3881m2t   B     GOLGLYCEROL R - 396
1m2t_B_3881m2t   B     GOLGLYCEROL D - 397
1m2t_B_3881m2t   B     GOLGLYCEROL L - 398

Clusters included in this Subclass
CLUSTER: HA.4.141