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Information on SUBCLASS 5.34.1
Subclass Accession number: 6414
Subclass: 5.34.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 18.9 +/- 17.0
Average RMSD (Å) : 0.625 +/- 0.222

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XpXGXhGXX
(φψ)-conformation: bbaeaaebb
Pattern: [EKTW]x[LPVW]x[DET]x[G][AEPS]x[G][STV]xxxx
Conservation:-0.418-0.355-0.669-0.0380.420-0.4002.343-0.230-0.8892.343-0.091-0.701-0.355-0.414-0.544
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e3p_A_61e3p   A923EAVIDNGAFGTRTIREEEEE-GGG-EEEEEbbxbxaeaaebbbbb
1gd7_A_311gd7   A3246KLWVDLGPLGVKQSSEEEEE-GGG-EEEEExbbbxaeaaexbxbb
1mhm_A_3131mhm   A318332WSPEEFGEGGSIVYQEEEEE-GGG-EEEEEbbwbbaeaaebbbbb
1rkd_*_2191rkd   -219233TVLITLGSRGVWASVEEEEE-GGG-EEEEEbbbxxaeaaebxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1rkd_*_2191rkd   *     ADPADENOSINE-5'-DIPHOSPHATE T - 223
1rkd_*_2191rkd   *     ADPADENOSINE-5'-DIPHOSPHATE L - 224
1rkd_*_2191rkd   *     ADPADENOSINE-5'-DIPHOSPHATE G - 225
1rkd_*_2191rkd   *     ADPADENOSINE-5'-DIPHOSPHATE S - 226
1rkd_*_2191rkd   *     ADPADENOSINE-5'-DIPHOSPHATE G - 228
1rkd_*_2191rkd   *     ADPADENOSINE-5'-DIPHOSPHATE V - 229
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1rkd_*_2191rkd   * AB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH ADP.T - 223
1rkd_*_2191rkd   * AB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH ADP.G - 225

Clusters included in this Subclass
CLUSTER: HA.4.173