Information on SUBCLASS 5.34.1 |
Subclass Accession number: 6414
Subclass: 5.34.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 18.9 +/- 17.0 Average RMSD (Å) : 0.625 +/- 0.222 Consensus geometry
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Consensus Sequence: | XpXGXhGXX |
(φψ)-conformation: | bbaeaaebb |
Pattern: | [EKTW] | x | [LPVW] | x | [DET] | x | [G] | [AEPS] | x | [G] | [STV] | x | x | x | x |
Conservation: | -0.418 | -0.355 | -0.669 | -0.038 | 0.420 | -0.400 | 2.343 | -0.230 | -0.889 | 2.343 | -0.091 | -0.701 | -0.355 | -0.414 | -0.544 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e3p_A_6 | 1e3p | A | 9 | 23 | EAVIDNGAFGTRTIR | EEEEE-GGG-EEEEE | bbxbxaeaaebbbbb |
1gd7_A_31 | 1gd7 | A | 32 | 46 | KLWVDLGPLGVKQSS | EEEEE-GGG-EEEEE | xbbbxaeaaexbxbb |
1mhm_A_313 | 1mhm | A | 318 | 332 | WSPEEFGEGGSIVYQ | EEEEE-GGG-EEEEE | bbwbbaeaaebbbbb |
1rkd_*_219 | 1rkd | - | 219 | 233 | TVLITLGSRGVWASV | EEEEE-GGG-EEEEE | bbbxxaeaaebxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1rkd_*_219 | 1rkd | * | ADPADENOSINE-5'-DIPHOSPHATE | T - 223 |
1rkd_*_219 | 1rkd | * | ADPADENOSINE-5'-DIPHOSPHATE | L - 224 |
1rkd_*_219 | 1rkd | * | ADPADENOSINE-5'-DIPHOSPHATE | G - 225 |
1rkd_*_219 | 1rkd | * | ADPADENOSINE-5'-DIPHOSPHATE | S - 226 |
1rkd_*_219 | 1rkd | * | ADPADENOSINE-5'-DIPHOSPHATE | G - 228 |
1rkd_*_219 | 1rkd | * | ADPADENOSINE-5'-DIPHOSPHATE | V - 229 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1rkd_*_219 | 1rkd | * | AB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH ADP. | T - 223 |
1rkd_*_219 | 1rkd | * | AB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH ADP. | G - 225 |
Clusters included in this Subclass |
CLUSTER: HA.4.173 |