ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 12.10.1

Subclass Accession number: 6599
Subclass: 12.10.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
GO : GO:0005507 (>75 %) GO:0046914 (>75 %)
SCOP : 49502 (>75 %) 49503 (>75 %)

Number of loops: 2

Average sequence ID (%) : 36.4 +/- 0.0
Average RMSD (Å) : 0.600 +/- 0.000

Consensus geometry

d (Å): 3

delta (°): 45-90

theta (°): 90-135

rho (°): 225-270

Consensus Sequence:	hhCpphCGhcHXXMXG
(φψ)-conformation:	bbpappaeaaaaapbb

Pattern:	[Y]	[MR]	[FI]	[FI]	[C]	[NS]	[EQ]	[LY]	[C]	[G]	[IL]	[GN]	[H]	[AQ]	x	[M]	[FK]	[G]	[T]	[IL]	[TV]	[LV]
Conservation:	1.207	-0.820	-0.617	-0.617	2.018	-0.415	-0.212	-0.719	2.018	0.802	-0.415	-0.415	1.613	-0.922	-1.226	0.396	-1.124	0.802	0.396	-0.415	-0.719	-0.617

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cc3_A_108	1cc3	A	108	129	YMFFCSELCGINHALMKGTLTL	EEEE--S--STTGGG-EEEEEE	bbbbxaxpaeaaaaaxbbxbbx
2cua_A_143	2cua	A	145	166	YRIICNQYCGLGHQNMFGTIVV	EEEE--S--STTSTT-EEEEEE	bbxbxabpaeaaaaaxbbbbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1cc3_A_108	1cc3	A	CUCOPPER (II) ION	C - 112
1cc3_A_108	1cc3	A	CUCOPPER (II) ION	S - 113
1cc3_A_108	1cc3	A	CUCOPPER (II) ION	E - 114
1cc3_A_108	1cc3	A	CUCOPPER (II) ION	L - 115
1cc3_A_108	1cc3	A	CUCOPPER (II) ION	C - 116
1cc3_A_108	1cc3	A	CUCOPPER (II) ION	G - 117
1cc3_A_108	1cc3	A	CUCOPPER (II) ION	H - 120
1cc3_A_108	1cc3	A	CUCOPPER (II) ION	A - 121
1cc3_A_108	1cc3	A	CUCOPPER (II) ION	M - 123
2cua_A_143	2cua	A	ZNZINC ION	I - 148
2cua_A_143	2cua	A	CUADINUCLEAR COPPER ION	C - 149
2cua_A_143	2cua	A	CUADINUCLEAR COPPER ION	N - 150
2cua_A_143	2cua	A	CUADINUCLEAR COPPER ION	Q - 151
2cua_A_143	2cua	A	CUADINUCLEAR COPPER ION	Y - 152
2cua_A_143	2cua	A	CUADINUCLEAR COPPER ION	C - 153
2cua_A_143	2cua	A	CUADINUCLEAR COPPER ION	G - 154
2cua_A_143	2cua	A	CUADINUCLEAR COPPER ION	G - 156
2cua_A_143	2cua	A	CUADINUCLEAR COPPER ION	H - 157
2cua_A_143	2cua	A	CUADINUCLEAR COPPER ION	Q - 158
2cua_A_143	2cua	A	CUADINUCLEAR COPPER ION	M - 160

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1cc3_A_108	1cc3	A	CUAPURPLE CUA CENTER	C - 112
1cc3_A_108	1cc3	A	CUAPURPLE CUA CENTER	C - 116
1cc3_A_108	1cc3	A	CUAPURPLE CUA CENTER	H - 120

Clusters included in this Subclass

CLUSTER: HA.13.18