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Information on SUBCLASS 4.8.1
Subclass Accession number: 660
Subclass: 4.8.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 3.2 (>75 %)  3.2.1 (>75 %)  
GO : GO:0004553 (>75 %)  GO:0016798 (>75 %)  
SCOP : 53954 (>75 %)  53955 (>75 %)  
 Number of loops: 9

Average sequence ID (%) : 18.1 +/- 18.7
Average RMSD (Å) : 0.333 +/- 0.100

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XhGhXXhX
(φψ)-conformation: bbeaalpb
Pattern: x[FGILVY][FG][ilpy]x[egnq][afgivy]x
Conservation:-0.508-0.1792.370-0.359-0.6540.283-0.508-0.446
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
153l_*_90153l   -9097GFGLMQVDEETTTTEExbeaalxx
1b9o_A_481b9o   A4956EYGLFQISEETTTTEEbbeaalxx
1chk_A_441chk   A4552TGGIIGFCEETTTTEEbbeaavxb
1ejf_A_351ejf   A4148LGGSDNFKEETTTTEEbbeaavxx
1ekf_A_2241ekf   A228235LYGPDHQLEETTTTEEbbeaalxx
1fmj_A_351fmj   A3744KLGPKGYMEETTTTEExbeaavxx
1qgi_A_601qgi   A6067TIGLFGATEETTTTEExbeaavxb
1uhv_A_1131uhv   A113120TVFYWEGNEETTTTEEbbeaalxp
3lzt_*_513lzt   -5259DYGILQINEETTTTEEbbeaalxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ekf_A_2241ekf   A     PLPPYRIDOXAL-5'-PHOSPHATE E - 237
1qgi_A_601qgi   A     GCSD-GLUCOSAMINE T - 60
1qgi_A_601qgi   A     NAGN-ACETYL-D-GLUCOSAMINE T - 60
1qgi_A_601qgi   A     GCSD-GLUCOSAMINE F - 64
1qgi_A_601qgi   A     GCSD-GLUCOSAMINE G - 65
1qgi_A_601qgi   A     GCSD-GLUCOSAMINE A - 66
1qgi_A_601qgi   A     GCSD-GLUCOSAMINE T - 67
1uhv_A_1131uhv   A     DFX1,2-DEOXY-2-FLUORO-XYLOPYRANOSE F - 115
3lzt_*_513lzt   *     ACTACETATE ION D - 52
3lzt_*_513lzt   *     ACTACETATE ION L - 56
3lzt_*_513lzt   *     ACTACETATE ION Q - 57
3lzt_*_513lzt   *     ACTACETATE ION I - 58
3lzt_*_513lzt   *     ACTACETATE ION N - 59

Clusters included in this Subclass
CLUSTER: HA.3.61