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Information on SUBCLASS 2.9.2
Subclass Accession number: 6679
Subclass: 2.9.2 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 14.8 +/- 14.3
Average RMSD (Å) : 0.800 +/- 0.000

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: XXGXhX
(φψ)-conformation: bbepbb
Pattern: x[IV][HIV]x[G]x[AIY][ANP]x
Conservation:-0.6360.994-0.285-0.5192.288-0.168-0.461-0.461-0.753
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gk9_B_1881gk9   B190198YVHTGAYPDEEEES--EEbbxxexbxx
1rkd_*_61rkd   -715LVVLGSINAEEEE---EEbbbbexbbx
3grs_*_1243grs   -124132EIIRGHAAFEEEES--EExbbxexxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gk9_B_1881gk9   B     EDO1,2-ETHANEDIOL I - 188
1gk9_B_1881gk9   B     EDO1,2-ETHANEDIOL Y - 196
1gk9_B_1881gk9   B     EDO1,2-ETHANEDIOL P - 197
1rkd_*_61rkd   *     RIBRIBOSE S - 12
1rkd_*_61rkd   *     RIBRIBOSE N - 14
1rkd_*_61rkd   *     RIBRIBOSE A - 15
1rkd_*_61rkd   *     RIBRIBOSE D - 16
1rkd_*_61rkd   *     PO4PHOSPHATE ION H - 17
3grs_*_1243grs   *     FADFLAVIN-ADENINE DINUCLEOTIDE G - 128
3grs_*_1243grs   *     FADFLAVIN-ADENINE DINUCLEOTIDE H - 129
3grs_*_1243grs   *     FADFLAVIN-ADENINE DINUCLEOTIDE A - 130
3grs_*_1243grs   *     FADFLAVIN-ADENINE DINUCLEOTIDE A - 131
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1rkd_*_61rkd   * RB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE.N - 14
1rkd_*_61rkd   * RB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE.D - 16

Clusters included in this Subclass
CLUSTER: AR.2.87