Information on SUBCLASS 2.9.2 |
Subclass Accession number: 6679
Subclass: 2.9.2 Type: AR beta-beta link DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 14.8 +/- 14.3 Average RMSD (Å) : 0.800 +/- 0.000 Consensus geometry
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Consensus Sequence: | XXGXhX |
(φψ)-conformation: | bbepbb |
Pattern: | x | [IV] | [HIV] | x | [G] | x | [AIY] | [ANP] | x |
Conservation: | -0.636 | 0.994 | -0.285 | -0.519 | 2.288 | -0.168 | -0.461 | -0.461 | -0.753 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gk9_B_188 | 1gk9 | B | 190 | 198 | YVHTGAYPD | EEEES--EE | bbxxexbxx |
1rkd_*_6 | 1rkd | - | 7 | 15 | LVVLGSINA | EEEE---EE | bbbbexbbx |
3grs_*_124 | 3grs | - | 124 | 132 | EIIRGHAAF | EEEES--EE | xbbxexxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gk9_B_188 | 1gk9 | B | EDO1,2-ETHANEDIOL | I - 188 |
1gk9_B_188 | 1gk9 | B | EDO1,2-ETHANEDIOL | Y - 196 |
1gk9_B_188 | 1gk9 | B | EDO1,2-ETHANEDIOL | P - 197 |
1rkd_*_6 | 1rkd | * | RIBRIBOSE | S - 12 |
1rkd_*_6 | 1rkd | * | RIBRIBOSE | N - 14 |
1rkd_*_6 | 1rkd | * | RIBRIBOSE | A - 15 |
1rkd_*_6 | 1rkd | * | RIBRIBOSE | D - 16 |
1rkd_*_6 | 1rkd | * | PO4PHOSPHATE ION | H - 17 |
3grs_*_124 | 3grs | * | FADFLAVIN-ADENINE DINUCLEOTIDE | G - 128 |
3grs_*_124 | 3grs | * | FADFLAVIN-ADENINE DINUCLEOTIDE | H - 129 |
3grs_*_124 | 3grs | * | FADFLAVIN-ADENINE DINUCLEOTIDE | A - 130 |
3grs_*_124 | 3grs | * | FADFLAVIN-ADENINE DINUCLEOTIDE | A - 131 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1rkd_*_6 | 1rkd | * | RB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE. | N - 14 |
1rkd_*_6 | 1rkd | * | RB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE. | D - 16 |
Clusters included in this Subclass |
CLUSTER: AR.2.87 |