|
|
|
|
|
|
|
| Information on SUBCLASS 5.13.1 |
|
Subclass Accession number: 7951
Subclass: 5.13.1 
Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: 
 Consensus coordinates:
|
Number of loops: 4 Average sequence ID (%) : 9.4 +/- 12.1 Average RMSD (Å) : 1.050 +/- 0.443 Consensus geometry
|
| Consensus Sequence: | hpXXpNXXX |
| (φψ)-conformation: | bbaabapbb |
| Pattern: | x | x | [FIV] | x | x | [DNS] | [ADPT] | [EKW] | [DNT] | [GN] | [EGK] | x | x | [NTWY] | x | [DETY] |
| Conservation: | -0.995 | -0.173 | 1.014 | -0.629 | -1.056 | 1.307 | -0.446 | 0.224 | 0.740 | 2.587 | 0.263 | -1.178 | -0.263 | -0.263 | -0.629 | -0.507 |
| Loops included in this Subclass |
| Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
| 1cv8_*_135 | 1cv8 | - | 136 | 151 | VIIIWNPWDNGFMTQD | EEEEE-TT-SS-EEEE | bbxbbxaababbbbbx |
| 1flg_A_79 | 1flg | A | 79 | 94 | RLFALDAKTGKRLWTY | EEEEEESSS--EEEEE | bbbbbxaaxaxxabbb |
| 1jeh_A_258 | 1jeh | A | 260 | 275 | EIVVEDTKTNKQENLE | EEEEEESSS--EEEEE | xxbbbxaabaxbbbxb |
| 1k8t_A_442 | 1k8t | A | 442 | 457 | YEFRISDENNEVQYKT | EEEEEESSS-BEEEEE | bbbbbbaabapbbbbx |
| PDB ligands within a cut-off distance of 6 Å in this subclass |
| Loop | PDB | Chain | Ligands | Residue |
| 1cv8_*_135 | 1cv8 | * | E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE | W - 143 |
| PDB Site Annotated loops in this subclass |
| Loop | PDB | Chain | Site | Residue |
| 1cv8_*_135 | 1cv8 | * | NULCATALYTIC TRIAD. | N - 141 |
| Clusters included in this Subclass |
| CLUSTER: HA.6.50 |
| For any comment or web-related incidence, send an email to the webmaster. |
|