Information on SUBCLASS 5.29.1 |
Subclass Accession number: 7967
Subclass: 5.29.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 11.9 +/- 12.0 Average RMSD (Å) : 1.133 +/- 0.321 Consensus geometry
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Consensus Sequence: | pXphGXphX |
(φψ)-conformation: | bbppeapbb |
Pattern: | [AV] | [FRY] | [QT] | x | [DEY] | [ALP] | [G] | x | [KNT] | [ALP] | x | [LVY] | x | [ILY] |
Conservation: | 0.460 | 0.015 | 0.527 | -0.839 | -0.140 | -0.684 | 3.119 | -0.528 | 0.015 | -0.684 | -0.606 | -0.063 | -0.684 | 0.092 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bxn_I_110 | 1bxn | I | 112 | 125 | VRQEEPGRTLRYSI | EEEE-STT-EEEEE | xbxxxxeaxbbxbx |
1fi4_A_297 | 1fi4 | A | 298 | 311 | AYTFDAGPNAVLYY | EEEE-SSS-EEEEE | bbbbxxeaxbbbxb |
1nr6_A_64 | 1nr6 | A | 64 | 77 | VFTVYLGMKPTVVL | EEEEEBSSSEEEEE | bbbbbxeaxxbxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1fi4_A_297 | 1fi4 | A | MSESELENOMETHIONINE | V - 297 |
1fi4_A_297 | 1fi4 | A | MSESELENOMETHIONINE | A - 298 |
1fi4_A_297 | 1fi4 | A | MSESELENOMETHIONINE | Y - 299 |
1fi4_A_297 | 1fi4 | A | MSESELENOMETHIONINE | T - 300 |
1fi4_A_297 | 1fi4 | A | MSESELENOMETHIONINE | F - 301 |
1fi4_A_297 | 1fi4 | A | MSESELENOMETHIONINE | D - 302 |
1fi4_A_297 | 1fi4 | A | MSESELENOMETHIONINE | G - 304 |
1fi4_A_297 | 1fi4 | A | MSESELENOMETHIONINE | P - 305 |
1fi4_A_297 | 1fi4 | A | MSESELENOMETHIONINE | Y - 310 |
1fi4_A_297 | 1fi4 | A | MSESELENOMETHIONINE | Y - 311 |
Clusters included in this Subclass |
CLUSTER: HA.4.103 |