Information on SUBCLASS 12.7.1 |
Subclass Accession number: 8047
Subclass: 12.7.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 70.0 +/- -23.9 Average RMSD (Å) : 0.200 +/- 0.000 Consensus geometry
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Consensus Sequence: | GhIXXTLXXDGDPhDh |
(φψ)-conformation: | bbpplbbpaalbpppb |
Pattern: | [DN] | [Y] | [G] | [FY] | [I] | [NP] | x | [T] | [L] | [AES] | [EL] | [D] | [G] | [D] | [P] | [LV] | [D] | [GV] | [L] | [V] |
Conservation: | -0.291 | 1.420 | 0.925 | 0.290 | -0.066 | -0.891 | -1.387 | 0.430 | -0.066 | -1.332 | -1.636 | 0.925 | 0.925 | 0.925 | 1.420 | -0.802 | 0.925 | -1.583 | -0.066 | -0.066 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1i40_A_54 | 1i40 | A | 54 | 73 | NYGYINHTLSLDGDPVDVLV | EEEE-TT---TTSS--EEEE | pbbbxxvbbxaavbppxbxb |
1qez_A_1051 | 1qez | A | 1051 | 1070 | NYGFIPGTLEEDGDPLDVLV | EEEE-TT---TTSS--EEEE | xbbbxxvbbbaavbxxxbbx |
2prd_*_54 | 2prd | - | 54 | 73 | DYGFIPSTLAEDGDPLDGLV | EEEE-SS---TTSS--EEEE | xbbbxxvbbxaavbxxxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1i40_A_54 | 1i40 | A | CACALCIUM ION | Y - 55 |
1i40_A_54 | 1i40 | A | CACALCIUM ION | G - 56 |
1i40_A_54 | 1i40 | A | CACALCIUM ION | Y - 57 |
1i40_A_54 | 1i40 | A | CACALCIUM ION | S - 63 |
1i40_A_54 | 1i40 | A | CACALCIUM ION | D - 65 |
1i40_A_54 | 1i40 | A | CACALCIUM ION | D - 67 |
1i40_A_54 | 1i40 | A | CACALCIUM ION | P - 68 |
1i40_A_54 | 1i40 | A | CACALCIUM ION | V - 69 |
1i40_A_54 | 1i40 | A | CACALCIUM ION | D - 70 |
1qez_A_1051 | 1qez | A | MGMAGNESIUM ION | E - 1060 |
1qez_A_1051 | 1qez | A | MGMAGNESIUM ION | D - 1062 |
1qez_A_1051 | 1qez | A | MGMAGNESIUM ION | D - 1064 |
1qez_A_1051 | 1qez | A | MGMAGNESIUM ION | P - 1065 |
1qez_A_1051 | 1qez | A | MGMAGNESIUM ION | D - 1067 |
Clusters included in this Subclass |
CLUSTER: HA.11.15 |