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Information on SUBCLASS 4.2.8
Subclass Accession number: 8424
Subclass: 4.2.8 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 9.7 +/- 12.1
Average RMSD (Å) : 0.725 +/- 0.206

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: hXGXhcpX
(φψ)-conformation: aalababb
Pattern: x[ADEK]xxx[AKR][DG]x[CFVY][DKN][AEQS]x
Conservation:-0.871-0.036-0.034-0.936-1.1930.3422.395-0.5500.0921.1690.221-0.600
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aj6_*_341aj6   -4859IDEALAGHCKEIHHHHHTTS--EEaaaaaavababb
1gvh_A_3291gvh   A329340EADRAKGQFDSEHHHHHHT--SEEaaaaaalababb
1o98_A_3761o98   A384395LKEIEADKYDAIHHHHHTT--SEEaaaaaalababb
2ts1_*_22ts1   -516AELQWRGLVNQTHHHHHHT--SEEaaaaaavababb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aj6_*_341aj6   *     NOVNOVOBIOCIN V - 43
1aj6_*_341aj6   *     NOVNOVOBIOCIN D - 45
1aj6_*_341aj6   *     NOVNOVOBIOCIN N - 46
1aj6_*_341aj6   *     NOVNOVOBIOCIN A - 47
1aj6_*_341aj6   *     NOVNOVOBIOCIN D - 49
1aj6_*_341aj6   *     NOVNOVOBIOCIN E - 50
1o98_A_3761o98   A     MNMANGANESE (II) ION N - 398

Clusters included in this Subclass
CLUSTER: HE.5.180