Information on SUBCLASS 5.41.1 |
Subclass Accession number: 8619
Subclass: 5.41.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 7.4 +/- 11.2 Average RMSD (Å) : 0.567 +/- 0.153 Consensus geometry
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Consensus Sequence: | XXXXXhXXX |
(φψ)-conformation: | aalpappbb |
Pattern: | [AS] | [FLM] | [ILM] | [DEQ] | [AQT] | x | [AR] | [AKR] | [ADQ] | [EG] | x | [PST] | [AGI] | [KPQ] | x | x | [GLW] | [FI] |
Conservation: | 1.247 | 0.667 | 1.156 | 1.278 | -0.432 | -1.043 | 0.383 | 0.056 | -0.554 | 0.907 | -1.165 | 0.056 | -1.165 | 0.178 | -0.677 | -1.532 | -1.043 | 1.683 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ddg_A_465 | 1ddg | A | 469 | 486 | AFMQQRAADEAPGKNWLF | HHHHHHHHHT--S-EEEE | aaaaaaaaalxapxbbbb |
1gvh_A_272 | 1gvh | A | 276 | 293 | AMLDTLAKAGHTAQVNWF | HHHHHHHHHT--S-EEEE | aaaaaaaaavpaxpbbbb |
2tps_A_169 | 2tps | A | 169 | 186 | SLIEAVRRQGISIPIVGI | HHHHHHHHTT----EEEE | aaaaaaaaavxapwbbxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ddg_A_465 | 1ddg | A | FADFLAVIN-ADENINE DINUCLEOTIDE | A - 465 |
1ddg_A_465 | 1ddg | A | FADFLAVIN-ADENINE DINUCLEOTIDE | P - 466 |
1gvh_A_272 | 1gvh | A | FADFLAVIN-ADENINE DINUCLEOTIDE | T - 272 |
1gvh_A_272 | 1gvh | A | FADFLAVIN-ADENINE DINUCLEOTIDE | P - 273 |
2tps_A_169 | 2tps | A | TPSTHIAMIN PHOSPHATE | V - 184 |
2tps_A_169 | 2tps | A | TPSTHIAMIN PHOSPHATE | I - 186 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gvh_A_272 | 1gvh | A | AC1FAD BINDING SITE FOR CHAIN A | T - 272 |
1gvh_A_272 | 1gvh | A | AC4NA BINDING SITE FOR CHAIN A | H - 294 |
Clusters included in this Subclass |
CLUSTER: HE.6.199 |