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Information on SUBCLASS 5.41.1
Subclass Accession number: 8619
Subclass: 5.41.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 7.4 +/- 11.2
Average RMSD (Å) : 0.567 +/- 0.153

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXXXhXXX
(φψ)-conformation: aalpappbb
Pattern: [AS][FLM][ILM][DEQ][AQT]x[AR][AKR][ADQ][EG]x[PST][AGI][KPQ]xx[GLW][FI]
Conservation:1.2470.6671.1561.278-0.432-1.0430.3830.056-0.5540.907-1.1650.056-1.1650.178-0.677-1.532-1.0431.683
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ddg_A_4651ddg   A469486AFMQQRAADEAPGKNWLFHHHHHHHHHT--S-EEEEaaaaaaaaalxapxbbbb
1gvh_A_2721gvh   A276293AMLDTLAKAGHTAQVNWFHHHHHHHHHT--S-EEEEaaaaaaaaavpaxpbbbb
2tps_A_1692tps   A169186SLIEAVRRQGISIPIVGIHHHHHHHHTT----EEEEaaaaaaaaavxapwbbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ddg_A_4651ddg   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 465
1ddg_A_4651ddg   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 466
1gvh_A_2721gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 272
1gvh_A_2721gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 273
2tps_A_1692tps   A     TPSTHIAMIN PHOSPHATE V - 184
2tps_A_1692tps   A     TPSTHIAMIN PHOSPHATE I - 186
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gvh_A_2721gvh   A AC1FAD BINDING SITE FOR CHAIN AT - 272
1gvh_A_2721gvh   A AC4NA BINDING SITE FOR CHAIN AH - 294

Clusters included in this Subclass
CLUSTER: HE.6.199