ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 9.5.1

Subclass Accession number: 8739
Subclass: 9.5.1

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 33.3 +/- 26.5
Average RMSD (Å) : 0.475 +/- 0.150

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 45-90

Consensus Sequence:	hXXNhGXXXXGhX
(φψ)-conformation:	aalaplbplbebb

Pattern:	[GN]	[AVY]	x	x	x	[RS]	[AST]	[LM]	x	x	x	x	[ILM]	[AL]	[LT]	x	[N]	[ILMV]	[G]	x	x	x	[AGT]	[G]	[CV]	[NV]	x
Conservation:	0.731	-0.633	-0.556	-0.788	-0.649	0.041	-0.127	0.667	-0.808	-1.195	-0.735	-0.823	0.285	-0.227	-0.121	0.319	2.396	0.118	2.396	-0.886	-0.769	0.375	-0.525	2.396	0.132	-0.245	-0.769

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aa6_*_305	1aa6	-	305	331	GVETVRSLTSLAMLTGNLGKPHAGVNP	HHHHHHHHHHHHHHTT-SSSTT--EEE	aaaaaaaaaaaaaaalabvbxvbebbx
1g8k_A_393	1g8k	A	393	419	NYVIQSALLDLVIATHNVGRRGTGCVR	HHHHHHHHHHHHHHTT-SSSTT--EEE	aaaaaaaaaaaaaaalabvbxvbebbx
1h0h_A_376	1h0h	A	379	405	GVQNIRAMSINQLLLGNIGVAGGGVNA	HHHHHHHHHHHHHHTT-SSSTT-SEEE	aaaaaaaaaaaaaaavaxvbxvbebxx
1kqf_A_418	1kqf	A	418	444	GAQNIRTMAMIQLLLGNMGMAGGGVNA	HHHHHHHHHHHHHHHT-TT-TT-SEEE	aaaaaaaaaaaaaaavaxvxxvFebxx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1g8k_A_393	1g8k	A	HGMERCURY (II) ION	N - 393
1g8k_A_393	1g8k	A	HGMERCURY (II) ION	Q - 397
1g8k_A_393	1g8k	A	HGMERCURY (II) ION	R - 419
1g8k_A_393	1g8k	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	R - 419
1g8k_A_393	1g8k	A	OXOOXO GROUP	R - 419
1g8k_A_393	1g8k	A	4MOMOLYBDENUM(IV) ION	R - 419
1h0h_A_376	1h0h	A	CACALCIUM ION	L - 393
1h0h_A_376	1h0h	A	CACALCIUM ION	G - 394
1h0h_A_376	1h0h	A	CACALCIUM ION	N - 395
1h0h_A_376	1h0h	A	CACALCIUM ION	V - 398
1kqf_A_418	1kqf	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	N - 421

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h0h_A_376	1h0h	A	1APUTATIVE FORMATE ENTRY TO ACTIVE SITE	H - 376
1h0h_A_376	1h0h	A	AC6CA BINDING SITE FOR CHAIN A	L - 393
1h0h_A_376	1h0h	A	AC6CA BINDING SITE FOR CHAIN A	G - 394
1h0h_A_376	1h0h	A	AC6CA BINDING SITE FOR CHAIN A	N - 395

Clusters included in this Subclass