ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.39.1

Subclass Accession number: 9088
Subclass: 4.39.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 2

Average sequence ID (%) : 37.5 +/- 0.0
Average RMSD (Å) : 0.300 +/- 0.000

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	EKXpLpEp
(φψ)-conformation:	aa_bbpaa

Pattern:	[L]	[F]	[D]	[FY]	[L]	[AT]	[E]	[K]	x	[ST]	[L]	[ST]	[E]	[EK]	[E]	[AT]	[RT]	[EK]	[FI]	[LM]	[KR]	[AQ]	[IL]	[L]	[EN]	[GV]	[IV]	[CY]	[AY]	[L]	[H]	[KS]
Conservation:	0.321	1.628	1.628	0.811	0.321	-0.821	0.974	0.974	-1.474	-0.495	0.321	-0.495	0.974	-0.332	0.974	-0.821	-0.985	-0.332	-0.658	-0.168	-0.005	-1.148	-0.332	0.321	-0.495	-1.638	-0.005	-0.332	-1.148	0.321	2.934	-0.821

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1jks_A_101	1jks	A	101	132	LFDFLAEKESLTEEEATEFLKQILNGVYYLHS	HHHHHHHHSS--HHHHHHHHHHHHHHHHHHHH	aaaaaaaaGbbxaaaaaaaaaaaaaaaaaaaa
1phk_*_111	1phk	-	111	142	LFDYLTEKVTLSEKETRKIMRALLEVICALHK	HHHHHHHHSS--HHHHHHHHHHHHHHHHHHHH	aaaaaaaagbbxaaaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1phk_*_111	1phk	*	ATPADENOSINE-5'-TRIPHOSPHATE	D - 113

Clusters included in this Subclass