ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 10.11.1

Subclass Accession number: 9227
Subclass: 10.11.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 53.9 +/- 1.4
Average RMSD (Å) : 0.400 +/- 0.100

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 45-90

rho (°): 180-225

Consensus Sequence:	AXGpphGpSXhEEp
(φψ)-conformation:	aagbpaeappbpaa

Pattern:	[AM]	[FY]	[T]	[F]	[LV]	[K]	[A]	x	[G]	[HKY]	[DES]	[IV]	[G]	[KS]	[S]	x	[CLV]	[E]	[E]	[DS]	[K]	[IL]	[DE]	[FL]	[A]	[KR]	[ES]	[FL]	[LMV]	[EK]	[K]	[A]	[EK]	[DE]
Conservation:	-1.249	0.996	1.056	1.767	-0.668	1.056	0.345	-1.610	1.767	-1.077	-0.998	-0.002	1.767	-0.768	0.345	-1.709	-1.314	1.056	1.056	-0.569	1.056	-0.349	0.145	-0.789	0.345	0.015	-0.908	-0.792	-0.840	-0.332	1.056	0.345	-0.332	0.142

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
13pk_A_243	13pk	A	244	277	AYTFLKAQGYSIGKSKCEESKLEFARSLLKKAED	HHHHHHHTT---TT----GGGHHHHHHHHHHHHH	aaaaaaaagxxaeaxpbxaaaaaaaaaaaaaaaa
1php_*_221	1php	-	222	255	AYTFVKALGHDVGKSLLEEDKIELAKSFMEKAKE	HHHHHHHTT---TTS---GGGHHHHHHHHHHHHH	aaaaaaaavbxaeaxpbbaaaaaaaaaaaaaaaa
1vpe_*_222	1vpe	-	222	255	MFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKE	HHHHHHHTS---TTS---GGGHHHHHHHHHHHHH	aaaaaaaaGOxaeapxbxaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
13pk_A_243	13pk	A	ADPADENOSINE-5'-DIPHOSPHATE	Y - 245
13pk_A_243	13pk	A	ADPADENOSINE-5'-DIPHOSPHATE	K - 259
1php_*_221	1php	*	ADPADENOSINE-5'-DIPHOSPHATE	L - 221
1php_*_221	1php	*	ADPADENOSINE-5'-DIPHOSPHATE	Y - 223
1php_*_221	1php	*	ADPADENOSINE-5'-DIPHOSPHATE	L - 237
1vpe_*_222	1vpe	*	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	M - 222
1vpe_*_222	1vpe	*	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	F - 223
1vpe_*_222	1vpe	*	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	R - 237

Clusters included in this Subclass