PDB: 1b8d Compound: rhodophytan phycoerythrin (alpha chain) Classification: PHOTOSYNTHESIS Entry date in PDB: 1999-02-18 Resolution [Å]: 1.90 R-Factor: 0.175

CHAIN: A SWISS-PROT/TREMBL: O36005    KEYWORD: 3D-structure    Bile pigment    Chloroplast    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycoerythrin alpha subunit    Red alga (Griffithsia monilis) GO:  light-harvesting complex (sensu Viridiplantae)    electron transport    photosynthesis    CHAIN: B SWISS-PROT/TREMBL: O36004    KEYWORD: 3D-structure    Bile pigment    Chloroplast    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycoerythrin beta subunit    Red alga (Griffithsia monilis) GO:  light-harvesting complex (sensu Viridiplantae)    electron transport    photosynthesis    CHAIN: K SWISS-PROT/TREMBL: O36005    KEYWORD: 3D-structure    Bile pigment    Chloroplast    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycoerythrin alpha subunit    Red alga (Griffithsia monilis) GO:  light-harvesting complex (sensu Viridiplantae)    electron transport    photosynthesis    CHAIN: L SWISS-PROT/TREMBL: O36004    KEYWORD: 3D-structure    Bile pigment    Chloroplast    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycoerythrin beta subunit    Red alga (Griffithsia monilis) GO:  light-harvesting complex (sensu Viridiplantae)    electron transport    photosynthesis

Image Source: PDB

Loops in ArchDB40 clusters

1b8d_A_103 - HH => SUBCLASS : 2.10.1
1b8d_A_113 - HH => SUBCLASS : 3.2.1
1b8d_A_113 - HH => SUBCLASS : 3.2.3

Loops in ArchDB95 clusters

1b8d_A_103 - HH => SUBCLASS : 2.9.1
1b8d_A_113 - HH => SUBCLASS : 3.1.4
1b8d_B_113 - HH => SUBCLASS : 3.1.4
1b8d_A_113 - HH => SUBCLASS : 3.1.7
1b8d_B_113 - HH => SUBCLASS : 3.2.5

Loops not clustered in ArchDB

1b8d_A_4 - HH
1b8d_B_103 - HH
1b8d_B_76 - HH
1b8d_B_48 - HH
1b8d_B_34 - HH
1b8d_B_22 - HH
1b8d_B_4 - HH
1b8d_A_124 - HH
1b8d_A_76 - HH
1b8d_A_21 - HH
1b8d_B_124 - HH

1b8d A - percentage of sequence identity: 100
1b8d K - percentage of sequence identity: 100
1eyx A - percentage of sequence identity: 84
1eyx B - percentage of sequence identity: 80
1eyx K - percentage of sequence identity: 84
1lia A - percentage of sequence identity: 84
1lia K - percentage of sequence identity: 84