PDB: 1d2e Compound: elongation factor tu (ef-tu) Classification: RNA BINDING PROTEIN Entry date in PDB: 1999-09-28 Resolution [Å]: 1.94 R-Factor: 0.237

CHAIN: A SWISS-PROT/TREMBL: P49410    KEYWORD: 3D-structure    Elongation factor    GTP-binding    Mitochondrion    Protein biosynthesis    Transit peptide    SCOP: b.43.3.1 All beta proteins    Reductase/isomerase/elongation factor common domain    Translation proteins    Elongation factors    Elongation factor Tu (EF-Tu), domain 2    Cow (Bos taurus), mitochondrial SCOP: b.44.1.1 All beta proteins    Elongation factor/aminomethyltransferase common domain    EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain    EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain    Elongation factor Tu (EF-Tu)    Cow (Bos taurus), mitochondrial SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    Elongation factor Tu (EF-Tu), N-terminal (G) domain    Cow (Bos taurus), mitochondrial GO:  GTP binding    translation elongation factor activity    protein biosynthesis    translational elongation    CHAIN: B SWISS-PROT/TREMBL: P49410    KEYWORD: 3D-structure    Elongation factor    GTP-binding    Mitochondrion    Protein biosynthesis    Transit peptide    SCOP: b.43.3.1 All beta proteins    Reductase/isomerase/elongation factor common domain    Translation proteins    Elongation factors    Elongation factor Tu (EF-Tu), domain 2    Cow (Bos taurus), mitochondrial SCOP: b.44.1.1 All beta proteins    Elongation factor/aminomethyltransferase common domain    EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain    EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain    Elongation factor Tu (EF-Tu)    Cow (Bos taurus), mitochondrial SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    Elongation factor Tu (EF-Tu), N-terminal (G) domain    Cow (Bos taurus), mitochondrial GO:  GTP binding    translation elongation factor activity    protein biosynthesis    translational elongation    CHAIN: C SWISS-PROT/TREMBL: P49410    KEYWORD: 3D-structure    Elongation factor    GTP-binding    Mitochondrion    Protein biosynthesis    Transit peptide    SCOP: b.43.3.1 All beta proteins    Reductase/isomerase/elongation factor common domain    Translation proteins    Elongation factors    Elongation factor Tu (EF-Tu), domain 2    Cow (Bos taurus), mitochondrial SCOP: b.44.1.1 All beta proteins    Elongation factor/aminomethyltransferase common domain    EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain    EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain    Elongation factor Tu (EF-Tu)    Cow (Bos taurus), mitochondrial SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    Elongation factor Tu (EF-Tu), N-terminal (G) domain    Cow (Bos taurus), mitochondrial GO:  GTP binding    translation elongation factor activity    protein biosynthesis    translational elongation    CHAIN: D SWISS-PROT/TREMBL: P49410    KEYWORD: 3D-structure    Elongation factor    GTP-binding    Mitochondrion    Protein biosynthesis    Transit peptide    SCOP: b.43.3.1 All beta proteins    Reductase/isomerase/elongation factor common domain    Translation proteins    Elongation factors    Elongation factor Tu (EF-Tu), domain 2    Cow (Bos taurus), mitochondrial SCOP: b.44.1.1 All beta proteins    Elongation factor/aminomethyltransferase common domain    EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain    EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain    Elongation factor Tu (EF-Tu)    Cow (Bos taurus), mitochondrial SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    Elongation factor Tu (EF-Tu), N-terminal (G) domain    Cow (Bos taurus), mitochondrial GO:  GTP binding    translation elongation factor activity    protein biosynthesis    translational elongation

Image Source: PDB

Loops in ArchDB40 clusters

1d2e_A_100 - HA => SUBCLASS : 2.1.1
1d2e_A_111 - HA => SUBCLASS : 2.2.1
1d2e_A_377 - HA => SUBCLASS : 2.3.6
1d2e_A_421 - HA => SUBCLASS : 2.3.7
1d2e_A_289 - HA => SUBCLASS : 2.4.4
1d2e_A_297 - HA => SUBCLASS : 2.4.11
1d2e_A_264 - HA => SUBCLASS : 3.6.1
1d2e_A_121 - EH => SUBCLASS : 2.1.3
1d2e_A_57 - EH => SUBCLASS : 6.1.1
1d2e_A_146 - EH => SUBCLASS : 6.11.1
1d2e_A_176 - EH => SUBCLASS : 7.17.1
1d2e_A_311 - AR => SUBCLASS : 1.1.4
1d2e_A_259 - AR => SUBCLASS : 2.1.3
1d2e_A_315 - AR => SUBCLASS : 3.3.1
1d2e_A_283 - AR => SUBCLASS : 3.3.1
1d2e_A_272 - AR => SUBCLASS : 4.35.1
1d2e_A_403 - AR => SUBCLASS : 5.30.1
1d2e_A_321 - AR => SUBCLASS : 12.2.1

Loops in ArchDB95 clusters

1d2e_A_121 - EH => SUBCLASS : 3.3.1
1d2e_A_57 - EH => SUBCLASS : 6.1.1
1d2e_A_146 - EH => SUBCLASS : 6.21.1
1d2e_A_176 - EH => SUBCLASS : 7.18.1
1d2e_A_311 - AR => SUBCLASS : 1.2.2
1d2e_A_259 - AR => SUBCLASS : 2.1.1
1d2e_A_283 - AR => SUBCLASS : 2.3.1
1d2e_A_315 - AR => SUBCLASS : 2.3.2
1d2e_A_283 - AR => SUBCLASS : 2.3.2
1d2e_A_283 - AR => SUBCLASS : 3.3.1
1d2e_A_315 - AR => SUBCLASS : 3.3.2
1d2e_A_272 - AR => SUBCLASS : 4.28.1
1d2e_A_403 - AR => SUBCLASS : 6.8.2
1d2e_A_339 - AR => SUBCLASS : 7.43.1
1d2e_A_321 - AR => SUBCLASS : 12.5.1
1d2e_A_100 - HA => SUBCLASS : 2.1.1
1d2e_A_111 - HA => SUBCLASS : 2.2.1
1d2e_A_377 - HA => SUBCLASS : 2.3.3
1d2e_A_421 - HA => SUBCLASS : 2.3.7
1d2e_A_111 - HA => SUBCLASS : 3.1.1
1d2e_A_264 - HA => SUBCLASS : 3.8.1
1d2e_A_383 - HA => SUBCLASS : 12.8.1

Loops not clustered in ArchDB

1d2e_A_106 - AR
1d2e_A_349 - AR
1d2e_A_215 - EH
1d2e_A_429 - EH
1d2e_A_233 - HE
1d2e_A_189 - HE
1d2e_A_159 - HE
1d2e_A_130 - HE
1d2e_A_92 - HE
1d2e_A_70 - HH
1d2e_A_220 - HH

1d2e A - percentage of sequence identity: 100
1d2e B - percentage of sequence identity: 100
1d2e C - percentage of sequence identity: 100
1d2e D - percentage of sequence identity: 100
1xb2 A - percentage of sequence identity: 100