PDB: 1ddj Compound: plasminogen Classification: BLOOD CLOTTING Entry date in PDB: 2000-02-18 Resolution [Å]: 2.00 R-Factor: 0.194

CHAIN: A SWISS-PROT/TREMBL: P00747    KEYWORD: 3D-structure    Blood coagulation    Disease mutation    Fibrinolysis    Glycoprotein    Hydrolase    Kringle    Phosphorylation    Plasma    Polymorphism    Repeat    Serine protease    Signal    Thrombophilia    Tissue remodeling    Zymogen    EC: 3.4.21.7 SCOP: b.47.1.2 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Eukaryotic proteases    Plasmin(ogen), catalytic domain    Human (Homo sapiens) GO:  calcium ion binding    chymotrypsin activity    plasmin activity    thrombin activity    trypsin activity    blood coagulation    organismal physiological process    proteolysis and peptidolysis    CHAIN: B SWISS-PROT/TREMBL: P00747    KEYWORD: 3D-structure    Blood coagulation    Disease mutation    Fibrinolysis    Glycoprotein    Hydrolase    Kringle    Phosphorylation    Plasma    Polymorphism    Repeat    Serine protease    Signal    Thrombophilia    Tissue remodeling    Zymogen    EC: 3.4.21.7 SCOP: b.47.1.2 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Eukaryotic proteases    Plasmin(ogen), catalytic domain    Human (Homo sapiens) GO:  calcium ion binding    chymotrypsin activity    plasmin activity    thrombin activity    trypsin activity    blood coagulation    organismal physiological process    proteolysis and peptidolysis    CHAIN: C SWISS-PROT/TREMBL: P00747    KEYWORD: 3D-structure    Blood coagulation    Disease mutation    Fibrinolysis    Glycoprotein    Hydrolase    Kringle    Phosphorylation    Plasma    Polymorphism    Repeat    Serine protease    Signal    Thrombophilia    Tissue remodeling    Zymogen    EC: 3.4.21.7 SCOP: b.47.1.2 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Eukaryotic proteases    Plasmin(ogen), catalytic domain    Human (Homo sapiens) GO:  calcium ion binding    chymotrypsin activity    plasmin activity    thrombin activity    trypsin activity    blood coagulation    organismal physiological process    proteolysis and peptidolysis    CHAIN: D SWISS-PROT/TREMBL: P00747    KEYWORD: 3D-structure    Blood coagulation    Disease mutation    Fibrinolysis    Glycoprotein    Hydrolase    Kringle    Phosphorylation    Plasma    Polymorphism    Repeat    Serine protease    Signal    Thrombophilia    Tissue remodeling    Zymogen    EC: 3.4.21.7 SCOP: b.47.1.2 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Eukaryotic proteases    Plasmin(ogen), catalytic domain    Human (Homo sapiens) GO:  calcium ion binding    chymotrypsin activity    plasmin activity    thrombin activity    trypsin activity    blood coagulation    organismal physiological process    proteolysis and peptidolysis

Image Source: PDB

Loops in ArchDB95 clusters

1ddj_A_772 - EH => SUBCLASS : 0.1.2
1ddj_A_698 - EH => SUBCLASS : 1.1.8
1ddj_A_566 - AR => SUBCLASS : 8.3.1
1ddj_A_597 - AR => SUBCLASS : 12.6.1
1ddj_A_648 - AR => SUBCLASS : 26.1.1
1ddj_A_586 - HA => SUBCLASS : 2.2.1
1ddj_A_576 - HA => SUBCLASS : 5.1.10
1ddj_A_615 - HA => SUBCLASS : 12.2.1

Loops in ArchDB-EC clusters

1ddj_A_615 - HA => SUBCLASS : 12.2.1

Loops not clustered in ArchDB

1ddj_A_597 - AR
1ddj_A_566 - AR
1ddj_A_648 - AR
1ddj_A_724 - AR
1ddj_A_724 - AR
1ddj_A_679 - HA
1ddj_A_744 - HA
1ddj_A_631 - HA
1ddj_A_615 - HA
1ddj_A_753 - HA
1ddj_A_586 - HA
1ddj_A_576 - HA
1ddj_A_753 - HA
1ddj_A_744 - HA
1ddj_A_679 - HA
1ddj_A_631 - HA
1ddj_A_707 - HE

1bml A - percentage of sequence identity: 100
1bml B - percentage of sequence identity: 100
1bui A - percentage of sequence identity: 99
1bui B - percentage of sequence identity: 99
1ddj A - percentage of sequence identity: 100
1ddj B - percentage of sequence identity: 100
1ddj C - percentage of sequence identity: 100
1ddj D - percentage of sequence identity: 100
1l4d A - percentage of sequence identity: 100
1l4z A - percentage of sequence identity: 100
1qrz A - percentage of sequence identity: 98
1qrz B - percentage of sequence identity: 98
1qrz C - percentage of sequence identity: 98
1qrz D - percentage of sequence identity: 98
1rjx B - percentage of sequence identity: 98