PDB: 1f44 Compound: cre recombinase Classification: HYDROLASE, LIGASE/DNA Entry date in PDB: 2001-10-12 Resolution [Å]: 2.05 R-Factor: 0.176

CHAIN: A SWISS-PROT/TREMBL: P06956    KEYWORD: 3D-structure    DNA integration    DNA recombination    SCOP: a.60.9.1 All alpha proteins    SAM domain-like    lambda integrase-like, N-terminal domain    lambda integrase-like, N-terminal domain    Cre recombinase    Bacteriophage P1 SCOP: d.163.1.1 Alpha and beta proteins (a+b)    DNA breaking-rejoining enzymes    DNA breaking-rejoining enzymes    Lambda integrase-like, catalytic core    Cre recombinase    Bacteriophage P1 GO:  DNA binding    DNA integration    DNA recombination

Image Source: PDB

Loops in ArchDB40 clusters

1f44_A_174 - HE => SUBCLASS : 5.14.1
1f44_A_185 - HA => SUBCLASS : 4.5.1
1f44_A_209 - EH => SUBCLASS : 1.1.5
1f44_A_209 - EH => SUBCLASS : 1.1.19
1f44_A_209 - EH => SUBCLASS : 2.2.13
1f44_A_155 - HH => SUBCLASS : 3.1.1
1f44_A_68 - HH => SUBCLASS : 3.3.1
1f44_A_290 - HH => SUBCLASS : 3.3.1
1f44_A_139 - HH => SUBCLASS : 3.4.1
1f44_A_306 - HH => SUBCLASS : 4.2.1

Loops in ArchDB95 clusters

1f44_A_209 - EH => SUBCLASS : 1.1.3
1f44_A_155 - HH => SUBCLASS : 3.1.1
1f44_A_290 - HH => SUBCLASS : 3.2.1
1f44_A_68 - HH => SUBCLASS : 3.2.1
1f44_A_139 - HH => SUBCLASS : 3.3.1
1f44_A_139 - HH => SUBCLASS : 3.3.12
1f44_A_306 - HH => SUBCLASS : 4.8.1
1f44_A_306 - HH => SUBCLASS : 4.31.1
1f44_A_174 - HE => SUBCLASS : 5.19.1
1f44_A_185 - HA => SUBCLASS : 3.2.1

Loops not clustered in ArchDB

1f44_A_193 - HA
1f44_A_24 - HH
1f44_A_39 - HH
1f44_A_85 - HH
1f44_A_111 - HH
1f44_A_215 - HH
1f44_A_258 - HH
1f44_A_318 - HH

1crx A - percentage of sequence identity: 99
1crx B - percentage of sequence identity: 99
1drg A - percentage of sequence identity: 100
1kbu A - percentage of sequence identity: 99
1kbu B - percentage of sequence identity: 99
1ma7 A - percentage of sequence identity: 99
1ma7 B - percentage of sequence identity: 99
1nzb A - percentage of sequence identity: 99
1nzb B - percentage of sequence identity: 99
1nzb E - percentage of sequence identity: 99
1nzb F - percentage of sequence identity: 99
1ouq A - percentage of sequence identity: 99
1ouq B - percentage of sequence identity: 99
1ouq E - percentage of sequence identity: 99
1ouq F - percentage of sequence identity: 99
1pvp A - percentage of sequence identity: 98
1pvp B - percentage of sequence identity: 98
1pvq A - percentage of sequence identity: 98
1pvq B - percentage of sequence identity: 98
1pvr A - percentage of sequence identity: 98
1pvr B - percentage of sequence identity: 98
1q3u A - percentage of sequence identity: 99
1q3u B - percentage of sequence identity: 99
1q3u E - percentage of sequence identity: 99
1q3u F - percentage of sequence identity: 99
1q3v A - percentage of sequence identity: 99
1q3v B - percentage of sequence identity: 99
1q3v E - percentage of sequence identity: 99
1q3v F - percentage of sequence identity: 99
1xns A - percentage of sequence identity: 99
1xns B - percentage of sequence identity: 99
1xo0 A - percentage of sequence identity: 99
1xo0 B - percentage of sequence identity: 99
2crx A - percentage of sequence identity: 99
2crx B - percentage of sequence identity: 99
3crx A - percentage of sequence identity: 99
3crx B - percentage of sequence identity: 99
4crx A - percentage of sequence identity: 99
4crx B - percentage of sequence identity: 99
5crx A - percentage of sequence identity: 100
5crx B - percentage of sequence identity: 100