PDB: 1gl4 Compound: nidogen-1 Classification: BASEMENT MEMBRANE Entry date in PDB: 2001-11-28 Resolution [Å]: 2.00 R-Factor: 0.217

CHAIN: A SWISS-PROT/TREMBL: P10493    KEYWORD: 3D-structure    Basement membrane    Calcium-binding    Cell adhesion    EGF-like domain    Extracellular matrix    Glycoprotein    Repeat    Signal    Sulfation    SCOP: d.22.1.2 Alpha and beta proteins (a+b)    GFP-like    GFP-like    Domain G2 of nidogen-1    Domain G2 of nidogen-1    Mouse (Mus musculus) SCOP: g.3.11.5 Small proteins    Knottins (small inhibitors, toxins, lectins)    EGF/Laminin    EGF-like domain of nidogen-1    EGF-like domain of nidogen-1    Mouse (Mus musculus) GO:  membrane    calcium ion binding    cell-matrix adhesion    CHAIN: B SWISS-PROT/TREMBL: Q05793    KEYWORD: 3D-structure    Basement membrane    EGF-like domain    Extracellular matrix    Glycoprotein    Heparan sulfate    Immunoglobulin domain    Laminin EGF-like domain    Proteoglycan    Repeat    Signal    SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Perlecan Ig3 domain    Mouse (Mus musculus) GO:  structural molecule activity

Image Source: PDB

Loops in ArchDB40 clusters

1gl4_A_459 - HE => SUBCLASS : 1.2.1
1gl4_A_371 - HA => SUBCLASS : 2.2.2
1gl4_B_1835 - HA => SUBCLASS : 2.2.32
1gl4_A_540 - HA => SUBCLASS : 2.4.2
1gl4_A_600 - HA => SUBCLASS : 4.1.1
1gl4_A_421 - HA => SUBCLASS : 4.34.1
1gl4_A_438 - EH => SUBCLASS : 3.25.1
1gl4_A_534 - AR => SUBCLASS : 2.8.3
1gl4_A_380 - AR => SUBCLASS : 3.5.1
1gl4_A_395 - AR => SUBCLASS : 3.5.7
1gl4_B_1779 - AR => SUBCLASS : 4.1.1
1gl4_B_1779 - AR => SUBCLASS : 4.1.2
1gl4_B_1823 - AR => SUBCLASS : 7.1.1

Loops in ArchDB95 clusters

1gl4_A_438 - EH => SUBCLASS : 3.6.3
1gl4_A_380 - AR => SUBCLASS : 1.1.1
1gl4_A_534 - AR => SUBCLASS : 2.9.1
1gl4_B_1788 - AR => SUBCLASS : 3.4.6
1gl4_A_395 - AR => SUBCLASS : 3.6.9
1gl4_B_1779 - AR => SUBCLASS : 4.1.1
1gl4_B_1788 - AR => SUBCLASS : 5.1.3
1gl4_B_1823 - AR => SUBCLASS : 7.1.1
1gl4_A_459 - HE => SUBCLASS : 1.3.3
1gl4_A_459 - HE => SUBCLASS : 1.3.4
1gl4_A_371 - HA => SUBCLASS : 2.2.2
1gl4_B_1835 - HA => SUBCLASS : 2.2.49
1gl4_A_540 - HA => SUBCLASS : 2.5.1
1gl4_A_600 - HA => SUBCLASS : 4.1.1
1gl4_A_421 - HA => SUBCLASS : 4.22.1
1gl4_A_421 - HA => SUBCLASS : 4.24.1

Loops not clustered in ArchDB

1gl4_B_1770 - AR
1gl4_A_573 - AR
1gl4_A_519 - AR
1gl4_A_516 - AR
1gl4_A_501 - AR
1gl4_B_1802 - AR
1gl4_A_470 - EH
1gl4_A_485 - HA
1gl4_A_550 - HA
1gl4_B_1817 - HA
1gl4_A_388 - HA
1gl4_A_401 - HA
1gl4_A_360 - HE
1gl4_A_478 - HE
1gl4_A_448 - HH

null nu - percentage of sequence identity: 0